| Sequence ID | dm3.chr3L |
|---|---|
| Location | 13,335,314 – 13,335,407 |
| Length | 93 |
| Max. P | 0.840327 |
| Location | 13,335,314 – 13,335,407 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 66.52 |
| Shannon entropy | 0.61272 |
| G+C content | 0.46299 |
| Mean single sequence MFE | -14.19 |
| Consensus MFE | -7.51 |
| Energy contribution | -7.57 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.01 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.87 |
| SVM RNA-class probability | 0.840327 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 13335314 93 - 24543557 UGUUGAAUUUGUGGCUAAAAGUUAUAAUCAUAUCAGUGCCACG--UUGUCUCAACUCA-ACUCAACU--------CCUCCCGUCUCCACCAUCUAACGUCUUUU-------- .(((((....(((((......................)))))(--(((........))-))))))).--------.............................-------- ( -14.55, z-score = -2.27, R) >droSim1.chr3L 12732925 101 - 22553184 UGUUGAAUUUGUGGCUAAAAGUUAUAAUCAUAUCAGUGCCACG--UUGUCUCAACUCA-ACUCAACUACCCUCCUCCACUCCUCUCCGCCAUCUAUCGUCUUUU-------- .(((((....(((((......................)))))(--(((........))-)))))))......................................-------- ( -14.55, z-score = -2.59, R) >droSec1.super_0 5509555 101 - 21120651 UGUUGAAUUUGUGGCUAAAAGUUAUAAUCAUAUCAGUGCCACG--UUGUCUCAACUCA-ACUUAACUACCCUCCUCCACUCCUCUCCGCCAUCUAUCGUCUUUU-------- .(((((....(((((......................)))))(--(((...)))))))-))...........................................-------- ( -12.95, z-score = -1.86, R) >droEre2.scaffold_4784 13347006 70 - 25762168 UGUUGAAUUUGUGGCUAAAAGUUAUAAUCAUAUCAGUGCCACG--CUGUCUCAACC---ACUCAGCU--------CCUCUCCU----------------------------- .(((((..(((((((.....)))))))......(((((...))--)))........---..))))).--------........----------------------------- ( -11.40, z-score = -1.02, R) >dp4.chrXR_group6 7739382 110 + 13314419 UGUUGAAUUUGCGGCUAGAAGUUAUAAUCAUAUCAGCGCCAAGACUUGCCUUGACUCGUGCCCACCCCCUGCCUCUCUGCCCC-CUGCCCCU-CUGCCACGACUCCUCAUCU ((..((..(((.(((.(((................((((((((......))))....)))).........((......))...-.......)-))))).))).))..))... ( -14.60, z-score = 0.97, R) >droPer1.super_47 528335 112 + 592741 UGUUGAAUUUGUGGCUAGAAGUUAUAAUCAUAUCAGCGCCAAGACUUGCCUUGACUCGUGCCCCUCUGCCCACCCCCUGCCCCUUUGCCCAUGCUGCCUCGACGCCUCAUCU .(((((....((((.((((.(.(((....))).).((((((((......))))....))))...)))).)))).............((....))....)))))......... ( -17.10, z-score = 0.70, R) >consensus UGUUGAAUUUGUGGCUAAAAGUUAUAAUCAUAUCAGUGCCACG__UUGUCUCAACUCA_ACUCAACU_CCC_CC_CCUCCCCUCUCCCCCAUCUAGCGUCUUUU________ .(((((...((((((......................)))))).......)))))......................................................... ( -7.51 = -7.57 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:23:22 2011