| Sequence ID | dm3.chr2L |
|---|---|
| Location | 5,122,407 – 5,122,501 |
| Length | 94 |
| Max. P | 0.688933 |
| Location | 5,122,407 – 5,122,501 |
|---|---|
| Length | 94 |
| Sequences | 12 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 73.82 |
| Shannon entropy | 0.55432 |
| G+C content | 0.44933 |
| Mean single sequence MFE | -23.33 |
| Consensus MFE | -16.04 |
| Energy contribution | -16.67 |
| Covariance contribution | 0.63 |
| Combinations/Pair | 1.23 |
| Mean z-score | -0.52 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.688933 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 5122407 94 + 23011544 ----UGUACUAACUCAUUUAUA-------UGUC--CACAGAUCGAGGAGAACAGCCGGAACCUAGAGUAUUUGGGUCAUGGUAUUGGCGGUUCGGUUAGUUCCCUCG ----..................-------....--.......(((((.(((((((((((.((..........))((((......))))..))))))).))))))))) ( -25.20, z-score = -0.48, R) >droSec1.super_5 3209034 94 + 5866729 ----UGUACUAACUCAAUUAUA-------UAUU--CAUAGAUCGAGGAGAACAGCCGCAACCUAGAGUAUUUGGGUCAUGGUAUUGGCGGUUCGGUUAGUUCCCUCG ----..................-------....--.......(((((.(((((((((.((((...((((((........))))))...))))))))).))))))))) ( -25.10, z-score = -1.35, R) >droYak2.chr2L 11922549 94 - 22324452 ----UGUACUUACUCAAUUAUU-------UAUU--CAUAGAUCGAGGAGAACAGCCGCAACCUAGAGUAUUUGGGUCAUGGUAUUGGCGGUUCGGUUAGUUCCCUCG ----..................-------....--.......(((((.(((((((((.((((...((((((........))))))...))))))))).))))))))) ( -25.10, z-score = -1.43, R) >droEre2.scaffold_4929 5203504 94 + 26641161 ----UGUACUUACACAAUUAUU-------UAUU--CAUAGAUCGAGGAGAACAGCCGCAACCUAGAGUAUUUGGGUCAUGGUAUUGGCGGUUCGGUUAGUUCCCUCG ----..................-------....--.......(((((.(((((((((.((((...((((((........))))))...))))))))).))))))))) ( -25.10, z-score = -1.61, R) >droAna3.scaffold_12916 6141177 96 - 16180835 ------UGCUUACUAAUUCCUUA---ACUUAUU--CUCAGAUCGAGGAGAACAGCCGCAACCUAGAAUAUUUGGGUCAUGGUAUUGGCGGUUCGGUCAGUUCCCUCG ------.................---.......--.......(((((.((((.((((..(((((((...)))))))..))))..((((......))))))))))))) ( -25.30, z-score = -1.03, R) >dp4.chr4_group3 8910832 92 - 11692001 ----UCAAUCU-CUUGAAUCC--------UACC--CACAGAUCGAGGAGAAUAGCCGCAACCUAGAAUAUUUGGGUCAUGGUAUUGGCGGUUCGGUUAGCUCCCUCG ----((((...-.))))....--------....--.......(((((.((.((((((.((((...((((((........))))))...))))))))))..))))))) ( -23.30, z-score = -0.13, R) >droPer1.super_1 6016767 92 - 10282868 ----UCAAUCU-CUUGAAUCC--------UACC--CACAGAUCGAGGAGAAUAGCCGCAACCUAGAAUAUUUGGGUCAUGGUAUUGGCGGUUCGGUUAGCUCCCUCG ----((((...-.))))....--------....--.......(((((.((.((((((.((((...((((((........))))))...))))))))))..))))))) ( -23.30, z-score = -0.13, R) >droWil1.scaffold_180772 7745832 102 - 8906247 --UGUUUAUUAACUAUUAUCCA---UUUCAUUUGAUACAGAUCGAGGAGAAUAGCCGCAACCUAGAAUAUUUGGGUCAUGGUAUUGGCGGUUCGGUUAGCUCGCUCG --....................---.................(((((((..((((((.((((...((((((........))))))...)))))))))).))).)))) ( -21.30, z-score = 0.25, R) >droVir3.scaffold_12963 13727959 104 - 20206255 --UAUGUAUUU-CUAAUCUUGAACCUUUCAACUUUCACAGAUCGAGGAGAAUAGCCGCAACCUAGAAUAUUUGGGUCAUGGUAUUGGCGGUUCGGUUAGCUCCCUCG --.........-...((((((((..........)))).))))(((((.((.((((((.((((...((((((........))))))...))))))))))..))))))) ( -24.60, z-score = -0.43, R) >droMoj3.scaffold_6500 6728677 98 - 32352404 --UAUCUAUCU-CUAAUAUCGA------CUACUUUCACAGAUCGAGGAGAAUAGCCGCAACCUAGAAUAUUUGGGUCAUGGUAUUGGCGGUUCGGUUAGCUCGCUCG --......(((-((....((((------((........)).)))))))))...((((..(((((((...)))))))..))))...(((((((.....))).)))).. ( -22.00, z-score = 0.21, R) >droGri2.scaffold_15252 7486902 107 - 17193109 ACUAUUAAUUUUGUUUUACUAAACGUAUCAAUUUUCACAGAUCGAGGAGAAUAGCCGCAACCUAGAAUAUUUGGGUCAUGGUAUUGGCGGUUCGGUUAGCUCCCUCG ............((((....))))..................(((((.((.((((((.((((...((((((........))))))...))))))))))..))))))) ( -23.80, z-score = -0.64, R) >triCas2.chrUn_44 177364 91 + 525920 --------UUUGCUCACACUUUGA--UUUCUCCCGAUUAGAUUGAAGAAAACACCCGAGCUUUGCAAUACUUGGCCCACUGGGACAGC--UCCAGCAGUCUCG---- --------...((((.((.(((((--((......))))))).))..(........)))))....................(((((.((--....)).))))).---- ( -15.90, z-score = 0.53, R) >consensus ____UGUAUUUACUCAUAUCUA_______UAUU__CACAGAUCGAGGAGAACAGCCGCAACCUAGAAUAUUUGGGUCAUGGUAUUGGCGGUUCGGUUAGCUCCCUCG ..........................................(((((((...(((((.((((...((((((........))))))...)))))))))..))).)))) (-16.04 = -16.67 + 0.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:18:06 2011