| Sequence ID | dm3.chr3L |
|---|---|
| Location | 13,324,315 – 13,324,410 |
| Length | 95 |
| Max. P | 0.751683 |
| Location | 13,324,315 – 13,324,410 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 80.00 |
| Shannon entropy | 0.38332 |
| G+C content | 0.50612 |
| Mean single sequence MFE | -24.48 |
| Consensus MFE | -14.28 |
| Energy contribution | -15.20 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.751683 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 13324315 95 - 24543557 CACAAACACACUCGGGCUACCAGAGAAACAACAAAUAAACACCGAAAGAGAUAGCUGCGUAUCGCUGUCUCUGUCC---GGCGAACUGAAGUUGGCCG ..........(((((....)).)))..................((.(((((((((........))))))))).))(---(((.(((....))).)))) ( -28.90, z-score = -2.97, R) >droAna3.scaffold_13337 11134362 93 + 23293914 UACAAAAUAAAGAGAAACAGCAAAUAAAC-ACAGACAGAGACCGGCAGAGACAGAUGCCAUUUGCUGGCUCUCUUU---CGGGCACAGAGUUCGACG- .........((((((..((((((((....-.......(....)((((........))))))))))))..))))))(---(((((.....))))))..- ( -27.80, z-score = -4.53, R) >droEre2.scaffold_4784 13336401 95 - 25762168 CACAAAUACACCCGGGCUACCAGAGAAACAACAAAUAAACACCGAAAGAGAUAGCGGCGUAUCUGUGUCUCUCUCC---GGCGAACUGUAGCUGGCCG ............(((......(((((.(((.((.((..((.(((..........))).)))).))))).)))))((---(((........)))))))) ( -20.90, z-score = -0.22, R) >droYak2.chr3L 13420402 95 - 24197627 CCCAAACACACUCGGGCUACCAGAGAAACAACAAAUAAACACCGAAAGAGAUAGCUGCGUAUCGCUGUCUCUCUCC---GGCGCACUGGGGCUGGCCG ((((......(((((....)).)))..............(.(((..(((((((((........)))))))))...)---)).)...))))........ ( -27.30, z-score = -1.46, R) >droSec1.super_0 5498913 95 - 21120651 CACAAACACACUCGGGCUACCAGAGAAACAACAAAUAAACACCGAAAGAGAAAGCUGCGUAUCGCUGUCUCUCUCC---GGCGAACUGAAGCUGGCCG ..........(((((....)).))).....................(((((.(((........))).)))))..((---(((........)))))... ( -20.60, z-score = -0.61, R) >droSim1.chr3L 12722242 98 - 22553184 CACAAACACACUCGGGCUACCAGAGAAACAACAAAUAAACACCGAAAGAGAUAGCUGCGUAUCGCUGUCUCUCUCCGAAGAAGAACUGAAGCUGGCCA ..............(((((.(((....................((.(((((((((........))))))))).))(......)..)))....))))). ( -21.40, z-score = -1.13, R) >consensus CACAAACACACUCGGGCUACCAGAGAAACAACAAAUAAACACCGAAAGAGAUAGCUGCGUAUCGCUGUCUCUCUCC___GGCGAACUGAAGCUGGCCG ..............((((.........................((.(((((((((........))))))))).))....(((........))))))). (-14.28 = -15.20 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:23:19 2011