| Sequence ID | dm3.chr3L |
|---|---|
| Location | 13,273,739 – 13,273,831 |
| Length | 92 |
| Max. P | 0.993676 |
| Location | 13,273,739 – 13,273,831 |
|---|---|
| Length | 92 |
| Sequences | 8 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 92.38 |
| Shannon entropy | 0.15013 |
| G+C content | 0.39703 |
| Mean single sequence MFE | -31.39 |
| Consensus MFE | -25.65 |
| Energy contribution | -26.53 |
| Covariance contribution | 0.88 |
| Combinations/Pair | 1.20 |
| Mean z-score | -3.31 |
| Structure conservation index | 0.82 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.63 |
| SVM RNA-class probability | 0.993676 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 13273739 92 - 24543557 UGUUGUUGUUGCCUUAACUACUGUUAAUUCUUCUAAUUGUGUGUACGUUGUUUGCGUGCACUAAUGUCGCAUAU---GCACAGGCAGCAACAACA .(((((((((((((((((....))))).............((((((((.....))))))))...(((.((....---))))))))))))))))). ( -36.40, z-score = -4.72, R) >droSim1.chr3L 12672277 92 - 22553184 UGUUGUUGUUGCCUUAACUACUGUUAAUUCUUCUAAUUGUGUGUACGUUGUUUGCGUGCACUAAUGUCGCAUAU---GCACAAGCAACAACAACA .(((((((((((.(((((....))))).........((((((((((((.....)))))))).......((....---))))))))))))))))). ( -33.60, z-score = -4.57, R) >droSec1.super_0 5448992 92 - 21120651 UGUUGUUGUUGCCUUAACUACUGUUAAUUCUUCUAAUUGUGUGUACGUUGUUUGCGUGCACUAAUGUCGCAUAU---GCACAAGCAGCAACAACA .(((((((((((.(((((....))))).........((((((((((((.....)))))))).......((....---))))))))))))))))). ( -33.60, z-score = -4.08, R) >droEre2.scaffold_4784 13283369 92 - 25762168 UGUUGUUGUUGCCUUAACUACUGUUAAUUCUUCUAAUUGUGUGUACGUUGUUUGGGUGCACUAAUGUCGCAUAU---GCACAAGCAGCAACAACA .(((((((((((.(((((....))))).........(((((((((.((...((((.....))))....)).)))---))))))))))))))))). ( -30.60, z-score = -2.95, R) >droYak2.chr3L 13364329 92 - 24197627 UGUUGUUGUUGCCUUAACUACUGUUAAUUCUUCUAAUUGUGUGUACGUUGUUUGCGUGCACUAAUGUCGCAUAU---GCACAAGCAGCAACAACA .(((((((((((.(((((....))))).........((((((((((((.....)))))))).......((....---))))))))))))))))). ( -33.60, z-score = -4.08, R) >droAna3.scaffold_13337 11079965 95 + 23293914 UGUUGUUGCUACCUUAACUAUUGUUAAUUCUUCUAAUUGUGUGUACGUUGUUUGCGUGUGCUAAUGUCGCAUAUGCAGCACAGGCAGCAACAACA .(((((((((.(((((((....)))))............(((((........(((((((((.......)))))))))))))))).))))))))). ( -33.90, z-score = -3.37, R) >droMoj3.scaffold_6680 10024600 92 + 24764193 UGUUGUUGCUGCCCUAACUACUGUUAAUUCUUCUAAUUGUGUGCACGUUGUUUGCAUGCGCUAAUGUCGCAUAU---GCACAAACAACAACAACA .(((((((.((...((((....)))).............((((((.((.....))((((((....).))))).)---)))))..)).))))))). ( -23.90, z-score = -1.52, R) >droGri2.scaffold_15110 23317400 91 - 24565398 -GUUGCUGCCAGCUUAACUACUGUUAAUUCUUCUAAUUGUGUGCACGUUGUUUGCGUGCGCUAAUGUCGCAUAU---GCAGAAACAAGAAGAACA -((((....))))(((((....)))))(((((((.((((.((((((((.....))))))))))))...((....---)).......))))))).. ( -25.50, z-score = -1.15, R) >consensus UGUUGUUGUUGCCUUAACUACUGUUAAUUCUUCUAAUUGUGUGUACGUUGUUUGCGUGCACUAAUGUCGCAUAU___GCACAAGCAGCAACAACA .(((((((((((.(((((....))))).........((((((((((((.....)))))))).......((.......))))))))))))))))). (-25.65 = -26.53 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:23:16 2011