| Sequence ID | dm3.chr3L |
|---|---|
| Location | 13,270,900 – 13,271,010 |
| Length | 110 |
| Max. P | 0.500000 |
| Location | 13,270,900 – 13,271,010 |
|---|---|
| Length | 110 |
| Sequences | 12 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 75.81 |
| Shannon entropy | 0.53530 |
| G+C content | 0.65514 |
| Mean single sequence MFE | -51.58 |
| Consensus MFE | -21.26 |
| Energy contribution | -21.26 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.59 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.00 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr3L 13270900 110 - 24543557 UUGAAGGAUCUGCGCCCAGUGGUGUUGCCAUGGAUCAGGGCCAUGCCCACUCCAUUCCUCAGCGGCAGGGCUGGGGGUGGUGGUGUGGGCGUUGG-ACUGGGUGGCAAAUC-- ......(((.(((((((((((((.(((........))).)))((((((((.((((((((((((......))))))))..)))).))))))))...-))))))).))).)))-- ( -54.40, z-score = -2.45, R) >droSim1.chr3L 12503805 95 - 22553184 ----------------UGGAAGGAU--CUGCGUCCUGUGGUGGCACACAGUCCAUUCCGCAGGGGCAAAGCUGGUGGCAUCGGUGGCGGCGUGGGCGUCUUGCUGCGACCCAG ----------------(((.(((((--....)))))((.(..(((....((((((.((((.........((((((...)))))).)))).))))))....)))..).))))). ( -36.20, z-score = 0.90, R) >droSec1.super_0 5446176 110 - 21120651 UUGAAGGAUCUGCGCCCAGUGGUGUUGCCAUGGAUCAGGGCCAUGCCCACUCCAUUCCUCAGCGGCAGGGCGGGGGGUGGUGGUGUGGGCGUGGG-ACUGGGUGGCAAAUC-- ...........(((((....)))))((((((...((((..((((((((((.(((((((((.((......)))))))))))....)))))))))).-.))))))))))....-- ( -54.40, z-score = -2.30, R) >droEre2.scaffold_4784 13280445 110 - 25762168 UUGAAGGAUCUGCGCCCAGUGGUGUUGCCAUGGAUCAGGGCCAUGCCCACUCCAUUCCUCAGCGGCAGGGCGGGUGGUGGCGGUGUGGGCGUGGG-ACUGGGUGGCAAGUC-- ...........(((((....)))))((((((...((((..((((((((((.((((..(((.((......)))))..))))....)))))))))).-.))))))))))....-- ( -49.30, z-score = -0.60, R) >droYak2.chr3L 13361534 110 - 24197627 UUGAAGGAUCUGCGCCCGGUGGUGUUGCCAUGGAUCAGGGCCAUGCCCACCCCAUUCCUCAGCGGCAGAGCGGGGGGCGGUGGUGUGGGCGUGGG-GCUGGGUGGCAAGUC-- ......((..((((((((((((.....))...........((((((((((.(((((((((.((......))..)))).))))).)))))))))).-))))))).)))..))-- ( -53.20, z-score = -0.80, R) >droAna3.scaffold_13337 11077230 110 + 23293914 UUGAAGGAUCGGCGUCCGGUGGUAUUGCCGUGGAUGAGGGCCAUGCCCACGCCGUUGCGGAGCGGCAAGGCCGGGGGCGGGGGAGUGGGCGUGGG-GCUGGGCGGCAGGUC-- ......(((((.((((((((((.....))...........((((((((((.((.((((....((((...))))...)))).)).)))))))))).-)))))))).).))))-- ( -53.70, z-score = -2.41, R) >dp4.chrXR_group6 5529250 110 - 13314419 UUGAAGGAUCGCCGUCCGGUUGUGUUGCCAUGGAUGAGGGCCAUGCCCACCCCAUUGCGCAGGGGCAGGGCCGGCGGUGGUGGUGUGGGCGUGGG-ACUGGGCGGCAGAUC-- ......(((((((((((((((......((........)).((((((((((.((((..(((...(((...))).)).)..)))).)))))))))))-)))))))))).))))-- ( -60.20, z-score = -3.11, R) >droPer1.super_47 17331 110 - 592741 UUGAAGGAUCGCCGUCCGGUUGUGUUGCCAUGGAUGAGGGCCAUGCCCACCCCAUUGCGCAGGGGCAGGGCCGGCGGUGGUGGUGUGGGCGUGGG-ACUGGGCGGCAGAUC-- ......(((((((((((((((......((........)).((((((((((.((((..(((...(((...))).)).)..)))).)))))))))))-)))))))))).))))-- ( -60.20, z-score = -3.11, R) >droWil1.scaffold_180698 6821424 110 - 11422946 UUGAAUGAACGUCUGCCCGUGGUAUUGCCAUGUAUCAUGGCCAUACCGACACCAUUGCGUAGUGGUAGAGCCGGCGGUGGUGGUGUCGGUGUGGG-ACUUGGUGGCAUAUC-- .((.((.((.(((...(((((((((......)))))))))(((((((((((((((..(((...((.....)).)).)..))))))))))))))))-)))).))..))....-- ( -48.80, z-score = -2.80, R) >droVir3.scaffold_13049 12682514 110 - 25233164 UUAAAGGAACGCCUGCCAGUCGUAUUGCCAUGCACCAGAGCCAUGCCCAUGCCAUUGCGCAACGGCAGCGCUGGCGGCGGCGGUGUGGGUGUCGG-ACUGGGCGGCAUAUC-- ..........(((..((((((....((((.((((((...(((..(((...((((..((((.......))))))))))))))))))))))))...)-)))))..))).....-- ( -44.50, z-score = 0.60, R) >droMoj3.scaffold_6680 10015520 110 + 24764193 UUGAAGGAACGCCUGCCGGUCGUAUUGCCAUGCACCAAAGCCAUGCCCAUGCCGUUGCGCAACGGCAGCGCCGGCGGCGGCGGUGUGGGCGUCGG-ACUCGGCGGCAUAUC-- ..........(((.((((((.((((....)))))))..((((((((((((((((((((.(..((((...))))..))))))))))))))))).))-.)).)))))).....-- ( -54.30, z-score = -1.16, R) >droGri2.scaffold_15110 23312880 110 - 24565398 UUGAACGAACGCCUGCCGGUUGUGUUGCCAUGCACCAGAGCCAUGCCUAAUCCAUUGCGCAACGGCAACGCCGGCGGCGGCGGAGUGGGCGUGGG-ACUGGGCGGCAUAUC-- .............(((((((......)))..((.((((..(((((((((.(((.((((......)))).((((....))))))).))))))))).-.))))))))))....-- ( -49.80, z-score = -1.05, R) >consensus UUGAAGGAUCGCCGCCCGGUGGUGUUGCCAUGGAUCAGGGCCAUGCCCACUCCAUUGCGCAGCGGCAGGGCCGGCGGCGGUGGUGUGGGCGUGGG_ACUGGGCGGCAAAUC__ .........................((((...........((((((((((.((....(((...(((...))).))).....)).)))))))).))........))))...... (-21.26 = -21.26 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:23:14 2011