| Sequence ID | dm3.chr3L |
|---|---|
| Location | 13,260,680 – 13,260,787 |
| Length | 107 |
| Max. P | 0.944840 |
| Location | 13,260,680 – 13,260,787 |
|---|---|
| Length | 107 |
| Sequences | 5 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 83.11 |
| Shannon entropy | 0.29567 |
| G+C content | 0.56370 |
| Mean single sequence MFE | -22.84 |
| Consensus MFE | -16.38 |
| Energy contribution | -16.78 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.25 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.50 |
| SVM RNA-class probability | 0.944840 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 13260680 107 + 24543557 UCCCGCUCGCUUUGAGCACGGAGCAUAAACAAUGGUGCUGCUUAAAGCAAAAAACCACGCUUCCCCUUGCCCCACGCUCCGUGCCCCUUCCAUUUCAGACCUCACCU ........(.((((((((((((((........((((..(((.....)))....)))).((........)).....)))))))))..........))))).)...... ( -27.20, z-score = -3.00, R) >droEre2.scaffold_4784 13270677 95 + 25762168 -CCCCCUCGCUUUGAGCUCGGCGCAUAAACAAUGGCGCUGCUUAAAGCAAAAAACCACGCUGCCCCUUGCCCC--------UACCUCCUCCCCUUCCGACCCCU--- -.......(((((((((..(((((..........))))))))))))))..........((........))...--------.......................--- ( -20.90, z-score = -2.86, R) >droYak2.chr3L 13351349 90 + 24197627 UCCCGCUCGCUUUGAGCUCUGAGCAUAAACAAUGGUGCUGCUUAAAGCAAAAAACCACGCUGCCCCUUGCCCC--------U------UCCCCUUUCGACCCCU--- ........(((((((((....(((((........))))))))))))))..........((........))...--------.------................--- ( -17.90, z-score = -1.93, R) >droSim1.chr3L 12659403 106 + 22553184 UCCCGCUCGCUUUGAGCACGGAGCAUAAACAAUGGUGCUGCUUAAAGCAAAAAACCACGCUGCCCCUUGCCACACACUCCGUGCCCCUUCCCAUUCAGACCCCCCU- ..........(((((((((((((.........((((..(((.....)))....)))).((........))......))))))))..........))))).......- ( -22.40, z-score = -1.46, R) >droSec1.super_0 5436158 106 + 21120651 UCCCGCUCGCUUUGAGCACGGAGCAUAAACAAUGGUGCUGCUUAAAGCAAAAAAACACGCUGCCCCUUGCCACACGCUCCGUGCCCAUUCCCAUUCAGACCCCCCU- ............((.(((((((((...........((((......)))).........((........)).....))))))))).))...................- ( -25.80, z-score = -2.03, R) >consensus UCCCGCUCGCUUUGAGCACGGAGCAUAAACAAUGGUGCUGCUUAAAGCAAAAAACCACGCUGCCCCUUGCCCCAC_CUCCGUGCCCCUUCCCAUUCAGACCCCCC__ ........(((((((((....(((((........))))))))))))))..........((........))..................................... (-16.38 = -16.78 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:23:12 2011