| Sequence ID | dm3.chr3L |
|---|---|
| Location | 13,257,595 – 13,257,693 |
| Length | 98 |
| Max. P | 0.784785 |
| Location | 13,257,595 – 13,257,693 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 86.98 |
| Shannon entropy | 0.22436 |
| G+C content | 0.38987 |
| Mean single sequence MFE | -24.64 |
| Consensus MFE | -16.42 |
| Energy contribution | -16.66 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.30 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.68 |
| SVM RNA-class probability | 0.784785 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 13257595 98 + 24543557 AUAUAUACAUACAUAUGUAUAUAUUUUUUAUGCUUCGGCCAAAGCUCACAUUUGCUUUAUGGUGCCUCACCUCUGUGGCUCCUUUUGCAGCAUAUUAA ((((((((((....))))))))))....((((((.(((..(((((........)))))..((.(((.((....)).))).))..))).)))))).... ( -26.50, z-score = -3.53, R) >droSim1.chr3L 12655340 92 + 22553184 ------AUAUAUACAUAUAUAUUUUUUUUAUGCUUCGGCCAAGGCUCACAUUUGCUUUAUGGUGCCUCACCUCUGUGGCUCCUUUUGCAGCAUAUUAA ------((((((....))))))......(((((...(((....)))......(((.....((.(((.((....)).))).))....)))))))).... ( -19.90, z-score = -1.47, R) >droSec1.super_0 5432495 92 + 21120651 ------AUAUAUACAUAUAUAUUUUUUUUAUGCUUCGGCCAACGCUCACAUUUGCUUUAUGGUGCCUCACCUCUGUGGCUCCUUUUGCAGCAUAUUAA ------((((((....))))))......(((((...(((....)))......(((.....((.(((.((....)).))).))....)))))))).... ( -17.90, z-score = -1.54, R) >droYak2.chr3L 13347576 96 + 24197627 --AUAUAUGUAUGUAUAUAUAUGUUUUUCAUGCUGCGGCCGAGGCUCACAUUUGCUUUAUGGUGCCUCACCUCUGUGGCUCCUUUUGCAGCAUAUUAA --(((((((((....))))))))).....(((((((((..(((((........)))))..((.(((.((....)).))).))..)))))))))..... ( -28.90, z-score = -2.49, R) >droEre2.scaffold_4784 13266913 94 + 25762168 ----AUAUAUACUCGCAUAGUGUAUUUUUAUGCUGCGGCCGAGGCUCACAUUUGCUUUAUGGUGGCUCACCUCCGUGGCUCCUUUUGCAGCAUAUUAA ----..(((((((.....)))))))...(((((((((((((((((........)))))((((.((....)).))))))))......)))))))).... ( -30.00, z-score = -2.48, R) >consensus ____AUAUAUAUACAUAUAUAUUUUUUUUAUGCUUCGGCCAAGGCUCACAUUUGCUUUAUGGUGCCUCACCUCUGUGGCUCCUUUUGCAGCAUAUUAA ............................((((((.(((..(((((........)))))..((.(((.(......).))).))..))).)))))).... (-16.42 = -16.66 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:23:11 2011