| Sequence ID | dm3.chr2L |
|---|---|
| Location | 5,103,923 – 5,104,013 |
| Length | 90 |
| Max. P | 0.853545 |
| Location | 5,103,923 – 5,104,013 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 90 |
| Reading direction | reverse |
| Mean pairwise identity | 60.64 |
| Shannon entropy | 0.71953 |
| G+C content | 0.54256 |
| Mean single sequence MFE | -27.02 |
| Consensus MFE | -9.39 |
| Energy contribution | -10.25 |
| Covariance contribution | 0.86 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.53 |
| Structure conservation index | 0.35 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.92 |
| SVM RNA-class probability | 0.853545 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 5103923 90 - 23011544 GAUGCGGAGGAGAAGGGAGUGGAACUGUGGCCACUGCUGUCUGGGUCAAGUUCGAAUGACAUUUACAUUCGCUUUUCCCGCGCGGCACAA ..((((..(((((((.((((((((((.(((((.(........)))))))))))((((...)))).))))).)))))))..))))...... ( -32.20, z-score = -1.44, R) >droEre2.scaffold_4929 5184284 86 - 26641161 ---GCCGCGGAUGACGGGG-GAGACGUGGGCCACUGCUGUCUGGGUCAAGUUCGGAUGACAUUUACAUUCGCUUUUCCCGCCCGGCACAA ---((((.((....((((.-.((((.(((((.......))))).))).....((((((.......))))))..)..)))))))))).... ( -30.70, z-score = -0.36, R) >droYak2.chr2L 11904125 72 + 22324452 -----------------GG-AAAACUUGGACCACUGCUGUCUGGGUCAAGUUCGGAUGACUUUUACAUACGCUUUUCCCGCCCCACACUA -----------------((-((((((((..(((........)))..))))).((.(((.......))).))..)))))............ ( -13.10, z-score = 0.50, R) >droSec1.super_5 3190573 72 - 5866729 ------------------GCUGCGGAGGAGGAGGGGGUGUCUGGGUCAAGUUCGGAUGACAUUUACAUUCGCUUUUCCCGCGCGGCACAA ------------------((((((..(((((((.((((((....((((........))))....)))))).)))))))..)))))).... ( -32.60, z-score = -3.74, R) >droSim1.chr2L 4917490 72 - 22036055 ------------------GCUGCGGAGGAGGAGGGGGUGUCUGGGUCAAGUUCGAAUGACAUUUACAUUCGCUUUUCCCGCGCGGCACAA ------------------((((((..(((((((.((((((....((((........))))....)))))).)))))))..)))))).... ( -32.60, z-score = -3.88, R) >apiMel3.GroupUn 5894006 86 - 399230636 ----ACGCGACAGUAUUGAUUAAAACGAAACUUGAGGUGUACGGUGAGCCGUUGUUUCACCCUAUCCUUGGUUUUUACCGCGCGGAAAAA ----.((((.(.(((...........((((((.((((.(((.((((((.......)))))).)))))))))))))))).)))))...... ( -20.90, z-score = -0.27, R) >consensus _________________GG_UAAACAGGAGCCACUGCUGUCUGGGUCAAGUUCGGAUGACAUUUACAUUCGCUUUUCCCGCGCGGCACAA ...................................(.((..((((..(((..((((((.......)))))))))..))))..)).).... ( -9.39 = -10.25 + 0.86)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:18:05 2011