| Sequence ID | dm3.chr3L |
|---|---|
| Location | 13,246,866 – 13,246,964 |
| Length | 98 |
| Max. P | 0.648539 |
| Location | 13,246,866 – 13,246,964 |
|---|---|
| Length | 98 |
| Sequences | 7 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 68.27 |
| Shannon entropy | 0.61585 |
| G+C content | 0.46620 |
| Mean single sequence MFE | -15.71 |
| Consensus MFE | -8.27 |
| Energy contribution | -8.96 |
| Covariance contribution | 0.68 |
| Combinations/Pair | 1.10 |
| Mean z-score | -0.73 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.648539 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 13246866 98 + 24543557 ---UAUGAAAACCGGCAGCUCGUUUCCCCCCAACAAAUGAAACGAAACAGCGAAAACAUCCAGCUGCGAGAGAUAGUUUACUUGCGGUAAUCACACCGAAA-- ---.........(((..(((.(((((....((.....))....))))))))...........((((((((.((....)).)))))))).......)))...-- ( -20.40, z-score = -1.58, R) >droSim1.chr3L 12642035 90 + 22553184 ---UAUAAAAACCGGCAGCCAGUU--CCCCCAAC-----AAACGAAAGAGC-AAAACAUCCAGCUGCGAGAGAUAGUUUACUUGCGGUAAUCACACCAAAA-- ---.......(((((((((..(((--.....)))-----...(....)...-..........)))))(((.((....)).))).)))).............-- ( -14.70, z-score = -1.18, R) >droSec1.super_0 5421895 91 + 21120651 ---UAUGAAAACCGGCAGCCAGUU--CCCCCAAC-----AAACGAAAGAGC-AAAACAUCCAGCUGCGAGAGAUAGUUUACUUGCGGUAAUCACACCAAAAA- ---..(((..(((((((((..(((--.....)))-----...(....)...-..........)))))(((.((....)).))).))))..))).........- ( -16.20, z-score = -1.29, R) >droYak2.chr3L 13335104 92 + 24197627 --GUAUAAAAACCGGCAGCCAGUU-CCCCUCAAU-----AAAUGGAAGAGA-AAAACAUCCAGCUGCGAGAGAUAGUUUACUUGCGGUAAUCACACCAAAC-- --...........((.........-.........-----...((((.(...-....).))))((((((((.((....)).)))))))).......))....-- ( -14.50, z-score = -0.16, R) >droEre2.scaffold_4784 13256387 91 + 25762168 --GUAUAAAAACCGGCAGCCAGUA--CCCCCAAU-----AAAUUGAAGAGG-AAAACAUCCAGCUGCGAGAGAUAGUUUACUUGCGGUAAUCACAUCAAAA-- --........(((((((((((((.--........-----..))))....((-(.....))).)))))(((.((....)).))).)))).............-- ( -15.70, z-score = -0.85, R) >droAna3.scaffold_13337 11054926 79 - 23293914 --GAAUAAAAACCGGCAGCGCGUU--CCCUCA--------------------GAUACAUCCAGCUGCGAGAGAUAGUUUACUUGCGGUAAUCACACUCCAAGC --........(((((((((.....--......--------------------..........)))))(((.((....)).))).))))............... ( -12.50, z-score = 0.88, R) >droWil1.scaffold_180698 6789695 87 + 11422946 UGCGAUAAUCAUGACGACCCUGUCAGGCCCCCCCUUC----------UCUCUCACUCUGCCCCUUGCCACACAGCAAUCUUUUGCUUGGCUCACGUC------ .(((.......(((((....)))))(((.........----------...........)))....((((...(((((....)))))))))...))).------ ( -15.95, z-score = -0.95, R) >consensus ___UAUAAAAACCGGCAGCCAGUU__CCCCCAAC_____AAACGAAAGAGC_AAAACAUCCAGCUGCGAGAGAUAGUUUACUUGCGGUAAUCACACCAAAA__ ..............................................................((((((((.((....)).))))))))............... ( -8.27 = -8.96 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:23:09 2011