| Sequence ID | dm3.chr3L |
|---|---|
| Location | 13,242,342 – 13,242,410 |
| Length | 68 |
| Max. P | 0.951173 |
| Location | 13,242,342 – 13,242,410 |
|---|---|
| Length | 68 |
| Sequences | 6 |
| Columns | 75 |
| Reading direction | forward |
| Mean pairwise identity | 60.06 |
| Shannon entropy | 0.72922 |
| G+C content | 0.50923 |
| Mean single sequence MFE | -19.27 |
| Consensus MFE | -8.23 |
| Energy contribution | -8.85 |
| Covariance contribution | 0.62 |
| Combinations/Pair | 1.86 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.57 |
| SVM RNA-class probability | 0.951173 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 13242342 68 + 24543557 CUGGGGCCUCAGAAAAAAAA-------GAGAGAACGCGCUCUGGUAUGCUCCAUAAAGUGGGGCACCAUGGCGAU ...(..((((..........-------))).)..).((((.((((..(((((((...))))))))))).)))).. ( -22.00, z-score = -1.72, R) >droGri2.scaffold_15112 2185595 60 + 5172618 CUGGGCCCCUGACAAAAAGG-------GGGUUGACUGACUGCAAUAGA----GGGGAGUUGAAU-GCAUGAC--- ...(((((((........))-------)))))((((..((........----))..))))....-.......--- ( -14.60, z-score = -0.71, R) >droSec1.super_0 5417381 68 + 21120651 CUGGGGCCCCAGAAAAAAAA-------GAGAGAACGCGCUCUGGUAUGCGCCAUAAAGUGGGGCAGCACGGAGAU ((((....))))........-------...........(((((...(((.((((...)))).)))...))))).. ( -22.50, z-score = -1.73, R) >droYak2.chr3L 13330485 75 + 24197627 CUGGGGCCCCAGCAAAAAAAAAAAAUAAAGAGAACGCGCUCUGGUAUGCCCCAUAAAGUGGGGCAGCGCGGCGAU ((((....))))......................((((((.......(((((((...)))))))))))))..... ( -26.21, z-score = -1.54, R) >droEre2.scaffold_4784 13252104 67 + 25762168 CUGGGGCCCCAGAAAAAAA--------GAGAGAAUGCGCUCUGGUAUGCCCCAUAAAGUGGGGCAGCACGGCGAU ((((....)))).......--------.........((((.((...((((((((...)))))))).)).)))).. ( -25.90, z-score = -2.21, R) >anoGam1.chr3L 6739461 54 + 41284009 -------------AAAAUGG-------CAGAUACCUCACUCCGAUACAAUGUAUAAAUUGCAAC-UCAUAUCAAU -------------.....((-------.((........))))((((...((((.....))))..-...))))... ( -4.40, z-score = -0.22, R) >consensus CUGGGGCCCCAGAAAAAAAA_______GAGAGAACGCGCUCUGGUAUGCCCCAUAAAGUGGGGCAGCACGGCGAU ((((....))))............................(((...(((((((.....)))))))...))).... ( -8.23 = -8.85 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:23:08 2011