| Sequence ID | dm3.chr3L |
|---|---|
| Location | 13,229,552 – 13,229,661 |
| Length | 109 |
| Max. P | 0.516602 |
| Location | 13,229,552 – 13,229,661 |
|---|---|
| Length | 109 |
| Sequences | 5 |
| Columns | 121 |
| Reading direction | forward |
| Mean pairwise identity | 65.67 |
| Shannon entropy | 0.60445 |
| G+C content | 0.35635 |
| Mean single sequence MFE | -20.48 |
| Consensus MFE | -11.00 |
| Energy contribution | -10.44 |
| Covariance contribution | -0.56 |
| Combinations/Pair | 1.21 |
| Mean z-score | -0.60 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.516602 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 13229552 109 + 24543557 AGCUUGCGAAGUGACUAACGAAAGUCAGUUAAACUGGAAACUGGUAAACUGGAACCUUUUGA-------CCUAAAACACUCUAUUCUAAUUCCAUAGUUAUAUAGUA-----UAGUAAGUA .((((((....(((((.((....)).))))).((((..(((((......(((((.....((.-------.......)).....)))))......)))))...)))).-----..)))))). ( -20.50, z-score = -0.30, R) >droEre2.scaffold_4784 13239518 116 + 25762168 AACUGGCGAAGUGACUAACGAAAGUCAGUUAAACUGACUAACAGCUGAACUGCGACUUUACCUGGGACUCCAUAACCACUUCGUUCUAAUUUCAUAGUUACA--GUAAA---UAGUAGGUA .((((((((((((.......((((((((((.....))))....((......))))))))...(((....)))....))))))))..(((((....)))))))--))...---......... ( -25.60, z-score = -0.55, R) >droYak2.chr3L 13317664 111 + 24197627 AACUUGCAAAGUGACUAACGAAAGUCAGUUAAACUGGCAACUUUACCUGGGAGACUUUAUAA-------CCCCCAACUGUUCGUGCUAAUUUCAUAGUUAUAUAGUAGAUAGUAGUAA--- ...((((....(((((.((....)).))))).....))))..((((.((((...........-------..))))(((((....((((......))))...))))).....))))...--- ( -21.72, z-score = -0.20, R) >droSec1.super_0 5404619 89 + 21120651 AGUUAGCGAAGUGACUAACGAAAGUCAGUUAAACUGAACACUGG--------AACCUUC-----------------------AUUCUAAUUCCAUAGUUAUAUAGUAAGAA-UCGUAAGUA .....((((..(((((.((....)).))))).(((((((..(((--------((.....-----------------------.......)))))..)))...)))).....-))))..... ( -15.50, z-score = -0.55, R) >droSim1.chr3L 12624892 89 + 22553184 AGCUAGCGAAGUGACUAACGAAAGUCAGUUAAACUGGAAACUGG--------AACCUUC-----------------------AUUCUAAUUCCAUAGUUAUAUAGCAAGUA-UAGUAAGUA .(((.((...(((((((((....)).........(((((..(((--------((.....-----------------------.))))).))))))))))))...)).))).-......... ( -19.10, z-score = -1.41, R) >consensus AGCUAGCGAAGUGACUAACGAAAGUCAGUUAAACUGGAAACUGG________AACCUUC__________CC___A_C__U__AUUCUAAUUCCAUAGUUAUAUAGUAAA_A_UAGUAAGUA .....((...(((((((.(....)((((.....)))).........................................................)))))))...))............... (-11.00 = -10.44 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:23:07 2011