| Sequence ID | dm3.chr3L |
|---|---|
| Location | 13,199,109 – 13,199,206 |
| Length | 97 |
| Max. P | 0.508661 |
| Location | 13,199,109 – 13,199,206 |
|---|---|
| Length | 97 |
| Sequences | 10 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 83.74 |
| Shannon entropy | 0.33362 |
| G+C content | 0.45176 |
| Mean single sequence MFE | -22.86 |
| Consensus MFE | -16.50 |
| Energy contribution | -17.11 |
| Covariance contribution | 0.61 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.28 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.508661 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 13199109 97 - 24543557 AGACCUAAUUGGCAACGCCUUUUGCCACUGCAAGUGACAGGAAACUUUCAGGCCAAGCGGCACCGGCAAACUAAUUAGCCUUAAAAUAAAACCAACA ....((((((((....(((...((((.((((...(((.((....)).))).))..)).))))..)))...))))))))................... ( -24.90, z-score = -1.67, R) >droSim1.chr3L 12594381 97 - 22553184 AGACCUAAUUGGCAACGCCUUUUGCCACUGCAAGUGACAGGAAACUUUCAGGCCAAGCGGCACCGGCAAACUAAUUAGCCUUAAAAUAAAACCAACA ....((((((((....(((...((((.((((...(((.((....)).))).))..)).))))..)))...))))))))................... ( -24.90, z-score = -1.67, R) >droSec1.super_0 5374640 97 - 21120651 AGACCUAAUUGGCAACGCCUUUUGCCACUGCAAGUGACAGGAAACUUUCAGGCCAAGCGGCACCGGCAAACUAAUUAGCCUUAAAAUAAAACCAACA ....((((((((....(((...((((.((((...(((.((....)).))).))..)).))))..)))...))))))))................... ( -24.90, z-score = -1.67, R) >droYak2.chr3L 13286180 97 - 24197627 AGACCUAAUUGGCAACGCCUUUUGCCACUGCAAGUGACAGCAAACUUUCAGGCCAAGCGGCACCGGCAAACUAAUUAGCCUUAAAAUAAAACCAACA ....(((((((((...))).((((((.(((.((((........)))).)))(((....)))...))))))..))))))................... ( -23.40, z-score = -1.27, R) >droEre2.scaffold_4784 13209147 97 - 25762168 AGACCUAAUUGGCAACGCCUUUUGCCACUGCAAGUGACAGGAAACUUUCAGGCCAAGCGGCACCGGCAAACUAAUUAGCCUUAAAAUAAAACCAACA ....((((((((....(((...((((.((((...(((.((....)).))).))..)).))))..)))...))))))))................... ( -24.90, z-score = -1.67, R) >droAna3.scaffold_13337 11012587 97 + 23293914 GGACCUAAUUGGCAACGCCUUUUGCCACUGCAAGUGACAGGAAACUUUUAGGCCAAGCGGCACCGGCAAACUAAUUAGCCCCAAAAUAAAACCAACA ((..((((((((....(((...((((.((((...(((.((....)).))).))..)).))))..)))...))))))))..))............... ( -26.10, z-score = -1.65, R) >droWil1.scaffold_180698 6727962 88 - 11422946 ACACCUAAUUGGCAACGCCUUUUGCCACUGCAAGUGACAGGAAACUUUCGGGCC--------CCGGCAAACUAAUUAGCCUUAAAA-GAAGCAAACC ....(((((((((...))).((((((...((...(((.((....)).))).)).--------..))))))..))))))........-.......... ( -18.90, z-score = -0.07, R) >droVir3.scaffold_13049 12587666 81 - 25233164 -AAUCUAAUUGGCAAUGCC-UUUGCCACUGCAAGUGACAGGAAACUUUCAUGCC---CAGCGCCGGGAAACUAAUUAACCUGAAAA----------- -........((((((....-.))))))(((...((((.((....)).))))...---)))...((((...........))))....----------- ( -19.80, z-score = -1.29, R) >droMoj3.scaffold_6680 9915797 82 + 24764193 -AAUCUAAUUGGCAACGCCUUUUGCCACUGCAAGUGACAGGAAACAUUCAGGCC---CAGUGCCGGGAAACUAAUUAACCUGAAAA----------- -....(((((((((..(((.(((((....)))))(((..(....)..)))))).---...))))((....))))))).........----------- ( -19.20, z-score = -0.52, R) >droGri2.scaffold_15110 1439576 82 + 24565398 AAAUUUAAUUGGGAUUG-CUUUUGCCACUGCAAGUGGCAGGAAACUUUUAUGCU---CAGCGCCGGCAAACUAAUUAACCUGAAAA----------- ....((((((((..(((-((((((((((.....))))))))).........((.---....))..)))).))))))))........----------- ( -21.60, z-score = -1.32, R) >consensus AGACCUAAUUGGCAACGCCUUUUGCCACUGCAAGUGACAGGAAACUUUCAGGCCAAGCGGCACCGGCAAACUAAUUAGCCUUAAAAUAAAACCAACA ....((((((((........((((((.(((.((((........)))).)))(((....)))...))))))))))))))................... (-16.50 = -17.11 + 0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:23:01 2011