| Sequence ID | dm3.chr3L |
|---|---|
| Location | 13,191,604 – 13,191,697 |
| Length | 93 |
| Max. P | 0.798893 |
| Location | 13,191,604 – 13,191,697 |
|---|---|
| Length | 93 |
| Sequences | 4 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 71.92 |
| Shannon entropy | 0.44786 |
| G+C content | 0.31129 |
| Mean single sequence MFE | -18.38 |
| Consensus MFE | -10.65 |
| Energy contribution | -11.77 |
| Covariance contribution | 1.13 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.72 |
| SVM RNA-class probability | 0.798893 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 13191604 93 + 24543557 AAAACCCAGUCAUGUUGCUUGAAUAUUAUUCAAUUCAGCUGG---GUAGCAAUUUACCAUUUA---UUAACUUUGGGUAUCUGUACUCGUUAAUAGAAG ...(((((((...((((..(((...)))..))))...)))))---))............((((---(((((...(((((....)))))))))))))).. ( -22.10, z-score = -2.54, R) >droSim1.chr3L 12586943 96 + 22553184 AAAACCCAGUCAGGUUGGUUGAAUAUUAUUCAAUUCAGCUUGGUGGUAGCAUUUUACCAUUUC---UUAACUUUGGGUAUCUUUACUCGGAAAAAGAAA ...((((((.((((((((((((((...)))))).))))))))(((((((....)))))))...---......)))))).(((((........))))).. ( -26.70, z-score = -3.06, R) >droSec1.super_0 5367288 87 + 21120651 AAAAUCCAAU----UUGGUUGAAUAUUAUUCAAUUCAGCUUGGUGGUAGCAAUUUACCAUUUG---UUAAGUUUGGGUAUCU-----CAGAAAAAGAAA ...((((((.----..((((((((........)))))))).((((((((....))))))))..---......))))))....-----............ ( -17.60, z-score = -1.37, R) >droYak2.chr3L 13278477 78 + 24197627 AAAACCAAGUCAUGUUGGUUGAAUAUUAUUUAAUUUAGCUUA---GUAGAAAUUCACCAUUUCAGUUUCAGUUUUUGUACU------------------ (((((......((...((((((((........))))))))..---)).((((((.........)))))).)))))......------------------ ( -7.10, z-score = 0.75, R) >consensus AAAACCCAGUCAUGUUGGUUGAAUAUUAUUCAAUUCAGCUUG___GUAGCAAUUUACCAUUUC___UUAACUUUGGGUAUCU_____CGGAAAAAGAAA ...((((((.......((((((((........)))))))).((((((((....))))))))...........))))))..................... (-10.65 = -11.77 + 1.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:23:00 2011