| Sequence ID | dm3.chr2L |
|---|---|
| Location | 5,102,863 – 5,102,983 |
| Length | 120 |
| Max. P | 0.803111 |
| Location | 5,102,863 – 5,102,983 |
|---|---|
| Length | 120 |
| Sequences | 13 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 79.09 |
| Shannon entropy | 0.49172 |
| G+C content | 0.68216 |
| Mean single sequence MFE | -50.06 |
| Consensus MFE | -29.83 |
| Energy contribution | -28.58 |
| Covariance contribution | -1.24 |
| Combinations/Pair | 1.75 |
| Mean z-score | -1.27 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.74 |
| SVM RNA-class probability | 0.803111 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 5102863 120 - 23011544 CGCCGGCGACAUGGCGUGUCCGUAGGGACGGGGUCCCGAGAUUAUCGGCGGCGGACUGGGCGCCGUUGUCCACGGCGAUGGUGGACGGUACAGAAAGGACGAGGGCGAUGGCGAGGCGGG ((((..((.(((.((.(((((...(((((...))))).....(((((((((((.......)))))))((((((.......))))))))))......)))))...)).))).)).)))).. ( -53.20, z-score = -1.47, R) >droSim1.chr2L 4916433 120 - 22036055 CGCCGGCGACAUGGCGUGUCUGUAGGGACGGGGUCCCGAGAUUAUCGGCGGCGGACUGGGCGCCGUUGUCCACGGCGACGGUGGACGGUACAGAAAGGACGAGGGCGACGGCGAGGCGGG (((((.((((((...)))))....(((((...))))).........).)))))..(((..(((((((((((.((....)).((..(..........)..)).)))))))))))...))). ( -50.90, z-score = -0.54, R) >droSec1.super_5 3189511 120 - 5866729 CGCCGGCGACAUGGCGUGUCCGUAGGGACGGGGUCCCGAGAUUAUCGGCGGCGGACUGGGCGCCGUUGUCCACGGCGACGGUGGACGGUACAGAAAGGACGAGGGCGACGGCGAGGCGGG (((((.(((.((((.....)))).(((((...))))).......))).)))))..(((..(((((((((((.((....)).((..(..........)..)).)))))))))))...))). ( -52.10, z-score = -0.51, R) >droYak2.chr2L 11903153 120 + 22324452 CGCCGGCGACAUGGCGUGUCCAUAGGGACGUGGUCCCGAGAUUAUCGGCGGCGGACUGGGCGCCGUUGUCCACGGCGACGGUGGACGGUAGAGGAAGGACGAGGGCGAUGGCGAGGCGGG ((((..((.(((.((.(((((...(((((...)))))....((((((((((((.......)))))))(((((((....).))))))))))).....)))))...)).))).)).)))).. ( -55.40, z-score = -2.16, R) >droEre2.scaffold_4929 5183235 120 - 26641161 CGCGGGGGACAUGGCGUGUCCAUAGGGACGGGGUCCCGAGAUUAUCGGCGGCGGACUGGGCGCCGUUGUCCAUGGCGACGGUGGACGGUACAGGAAGGACGAGGGCGAUGGCGAGGCGGG (((..(((((....(.(((((....))))).))))))..(.((((((.(..((.((((..(((((((((.....)))))))))..))))..........))..).)))))))...))).. ( -47.90, z-score = -0.93, R) >droAna3.scaffold_12916 6120308 120 + 16180835 CGCCGGCGACAUCGCAUGACCGUAGGGCCUAGGUCCGGAAAUAAUCGGUGGCGGACUGGGCGCCGUUGUCCACGGCGAGGGCGGACGGUACAGGAAGGACGAGGGCGACGGAGAGGCAGG .(((.(((....)))....((((...((((((.((((..............))))))))))(((.((((((.(.((....)).).(......)...)))))).))).))))...)))... ( -48.74, z-score = -1.11, R) >dp4.chr4_group3 8879555 120 + 11692001 CGCCGGUGACAUGGCAUGGCCAAAGGGUCGCGGCCCCGCAAUAAUGGGCGGCGGACUCGGCGCCGUCGUCCACGGCGAGGGCGGACGAUACAGAAAGGACGAGGGCGAGGGUGAGGCUGG .((((....)..)))..((((......((((.((((.........)))).))))((((..((((.((((((.(.((....)).).(......)...)))))).)))).))))..)))).. ( -52.70, z-score = -1.06, R) >droPer1.super_1 5984859 120 + 10282868 CGCCGGUGACAUGGCAUGGCCAAAGGGUCGCGGCCCGGCUAUAAUGGGCGGCGGACUCGGCGCCGUCGUCCACGGCGAGGGCGGACGAUACAGAAAGGACGAGGGCGAGGGUGAGGCUGG .((((....)..)))..((((......((((.(((((.......))))).))))((((..((((.((((((.(.((....)).).(......)...)))))).)))).))))..)))).. ( -54.70, z-score = -1.91, R) >droWil1.scaffold_180772 7714820 120 + 8906247 UGAUGGUGACAUGGCAUGUCCAAACGGGCGUGGCCCAGAUAUUAUUGGUGGUGGACUUGGCGCAGUUGUCCAUGGCGACGGUGGACGAUAUAGGAAAGAUGAGGGCGACGGUGAGGCAGG ..(((....))).((..((((....))))((.((((...........(((.(......).))).((((((((((....).))))))))).............)))).))......))... ( -37.00, z-score = -0.59, R) >droVir3.scaffold_12963 13694029 120 + 20206255 UGCCGGCGACAUGGCAUGUCCAAAGGGACGCGGUCCGGAUAUGAUGGGCGGCGGACUGGGCGCUGUUGUCCACGGCGACGGUGGCCGAUACAAAAACGAUGAGGGCGACGGUGAGGCGGC .((((.(..(((.(..(((((...((..(((.(((((.......))))).)))..))((.(((((((((.....))))))))).))................))))).).))).).)))) ( -51.70, z-score = -1.92, R) >droMoj3.scaffold_6500 6684841 120 + 32352404 CGCCGGCGACAUGGCCUGACCAUAGGGACGCGGUCCGGAUAUUAUGGGCGGCGGACUGGGCGCUGUUGUCCACGGCGAGGGCGGACGGUACAAAAAGGACGAGGGCGACGGCGAGGCGGG (((((((......)))...((...((..(((.(((((.......))))).)))..)).))(((((((((((.(.((....)).).((...(.....)..)).))))))))))).)))).. ( -52.60, z-score = -2.26, R) >droGri2.scaffold_15252 7460833 120 + 17193109 UGCCGGUGACAUGGCAUGGCCAAACGCACGCGGCCCGGAUAUUAUGGGCGGUGGGCUGGGCGCCGUUGUCCACGGCGAUGGCGGACGAUACAGAAAGGAUGAGGGCGAUGGCGAGGCGGG .((((....).((.(((.(((....((.(((.(((((.......))))).))).))((..(((((((((.....)))))))))..))................))).))).)).)))... ( -51.70, z-score = -1.71, R) >anoGam1.chr3R 16572532 102 + 53272125 CGCCAGCCGACGAACCUGCCGUUACGGGCG-AGUUUUGCCGUGGAGGG-GCCGAACCGGGC---GGUACCCAUGGUGAGGGCGACCGGAAGUACGUUGGUGGAGGUG------------- ((((.((((((((((.((((......))))-.)))(..((((((.(..-((((.......)---))).)))))))..)((....)).......)))))))...))))------------- ( -42.20, z-score = -0.30, R) >consensus CGCCGGCGACAUGGCAUGUCCAUAGGGACGCGGUCCCGAGAUUAUCGGCGGCGGACUGGGCGCCGUUGUCCACGGCGACGGUGGACGGUACAGAAAGGACGAGGGCGACGGCGAGGCGGG (((((....)..(((..((((....))))...)))..............)))).......(((((((((((.(.((....)).).((............)).)))))))))))....... (-29.83 = -28.58 + -1.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:18:04 2011