Locus 7227

Sequence ID dm3.chr3L
Location 13,176,006 – 13,176,118
Length 112
Max. P 0.744707
window9950

overview

Window 0

Location 13,176,006 – 13,176,118
Length 112
Sequences 3
Columns 112
Reading direction reverse
Mean pairwise identity 99.40
Shannon entropy 0.00820
G+C content 0.57440
Mean single sequence MFE -38.87
Consensus MFE -37.63
Energy contribution -37.97
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.39
Structure conservation index 0.97
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.56
SVM RNA-class probability 0.744707
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 13176006 112 - 24543557
AGCCACAGAUCCAGCAUCAGCUCCAGUUCGAAUUCGAGCUUGGGUCUCAGUCUGAGUUUCGGCGUGUUUGACAGCCGCCGACGGACAAGAGACAACGGACAGCGGACAACGG
.(((.(.(.((((((....)))((((((((....))))).)))(((((.(((((....((((((.((......)))))))))))))..)))))...)))).).)).)..... ( -39.50, z-score =  -1.57, R)
>droSim1.chr3L 12571452 112 - 22553184
AGCCACAGAUCCAGCAUCAGCUCCAGUUCGAAUUCGAGCUUGGGUCUCAGUCUGAGUUUCGGCGUGUUUGACAGCCGCCGACGGACAAGAGACAACGGACAGCGGACAACGG
.(((.(.(.((((((....)))((((((((....))))).)))(((((.(((((....((((((.((......)))))))))))))..)))))...)))).).)).)..... ( -39.50, z-score =  -1.57, R)
>droSec1.super_0 5351786 112 - 21120651
AGCCACAGAUCCAGCAUCAGCUCCAGUUCGAAUUCGAGCUUGGGCCUCAGUCUGAGUUUCGGCGUGUUUGACAGCCGCCGACGGACAAGAGACAACGGACAGCGGACAACGG
.(((.(.(.(((.......((((.((((((....)))))).))))(((.(((((....((((((.((......)))))))))))))..))).....)))).).)).)..... ( -37.60, z-score =  -1.03, R)
>consensus
AGCCACAGAUCCAGCAUCAGCUCCAGUUCGAAUUCGAGCUUGGGUCUCAGUCUGAGUUUCGGCGUGUUUGACAGCCGCCGACGGACAAGAGACAACGGACAGCGGACAACGG
.(((.(.(.((((((....)))((((((((....))))).)))(((((.(((((....((((((.((......)))))))))))))..)))))...)))).).)).)..... (-37.63 = -37.97 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:22:55 2011