| Sequence ID | dm3.chr3L |
|---|---|
| Location | 13,140,016 – 13,140,109 |
| Length | 93 |
| Max. P | 0.862142 |
| Location | 13,140,016 – 13,140,109 |
|---|---|
| Length | 93 |
| Sequences | 11 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 81.78 |
| Shannon entropy | 0.34894 |
| G+C content | 0.45603 |
| Mean single sequence MFE | -30.03 |
| Consensus MFE | -16.60 |
| Energy contribution | -16.97 |
| Covariance contribution | 0.37 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.30 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.96 |
| SVM RNA-class probability | 0.862142 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 13140016 93 + 24543557 --GGCAGGAUGCACUUGUGCAUGCCUAAUUAUUGGGACAAUUUGCUCUUGGAAUUUGCCUAUUAAUUAGCCAUU-GCACACGGC---AGACGA-AGGCGA------------- --.((.(..(((.(.((((((((.(((((((.((((.(((.((.(....).)).))))))).))))))).)).)-))))).)))---)..)..-..))..------------- ( -32.40, z-score = -3.04, R) >droSim1.chr3L 12534184 93 + 22553184 --GGCAGGAUGCACUUGUGCAUGCCUAAUUAUUGGGACAAUUUGCUCUUGGAAUUUGCCUAUUAAUUAGCCAUU-GCACACGGC---AGACGA-AGGCGA------------- --.((.(..(((.(.((((((((.(((((((.((((.(((.((.(....).)).))))))).))))))).)).)-))))).)))---)..)..-..))..------------- ( -32.40, z-score = -3.04, R) >droSec1.super_0 5316063 93 + 21120651 --GGCAGGAUGCACUUGUGCAUGCCUAAUUAUUGGGACAAUUUGCCCUUGGAAUUUGCCUAUUAAUUAGCCAUU-GCACACGGC---AGACGA-AGGCGA------------- --.((.(..(((.(.((((((((.(((((((.((((.(((....((...))...))))))).))))))).)).)-))))).)))---)..)..-..))..------------- ( -31.30, z-score = -2.37, R) >droYak2.chr3L 13225277 102 + 24197627 CUGGCAGGAUGCACUUGUGCAUGCCUAAUUAUUGGGACAAUUUGCUCUUGGAAUUUGCCUAUUAAUUAGCCAUU-GCACACGGC---ACACGGCAGACGAAGGCGA------- (((.(.(..(((.(.((((((((.(((((((.((((.(((.((.(....).)).))))))).))))))).)).)-))))).)))---)..)).)))..........------- ( -33.40, z-score = -2.41, R) >droEre2.scaffold_4784 13148600 93 + 25762168 --GGCAGGAUGCACUUGUGCAUGCCUAAUUAUUGGGACAAUUUGCUCUUGGAAUUUGCCUAUUAAUUAGCCAUU-GCACACGGC---AGACGA-AGGCGG------------- --.((.(..(((.(.((((((((.(((((((.((((.(((.((.(....).)).))))))).))))))).)).)-))))).)))---)..)..-..))..------------- ( -32.40, z-score = -2.96, R) >droAna3.scaffold_13337 10957121 109 - 23293914 UGGGCAGGAUGCACUUGUGCAUGCCUAAUUAUUGGGACAAUUUGCUCUUGGAAUUUGCCUAUUAAUUAGCCAUU-GCAAGCGGC---AAACGGCAGACGGCAGACGAAGAUGA ((.(((((.....))))).))((((((((((.((((.(((.((.(....).)).))))))).))))))(((.((-((.....))---))..)))....))))........... ( -30.90, z-score = -0.69, R) >dp4.chrXR_group6 7838188 93 - 13314419 --GGUUGGCUGCACUUGUGCAUGCCUAAUUAUUGGGACAAUUUGCUCUCGGAAUUUGCCUAUUAAUUAGACAUUUGCACACGG----AGACGC-ACGCGG------------- --.....(((((...((((((((.(((((((.((((.(((.((.(....).)).))))))).))))))).))..)))))).(.----...)))-).))..------------- ( -30.00, z-score = -3.04, R) >droPer1.super_9409 349 93 - 1207 --GGUUGGCUGCACUUGUGCAUGCCUAAUUAUUGGGACAAUUUGCUCUCGGAAUUUGCCUAUUAAUUAGACAUUUGCACACGG----AGACGC-ACGCGG------------- --.....(((((...((((((((.(((((((.((((.(((.((.(....).)).))))))).))))))).))..)))))).(.----...)))-).))..------------- ( -30.00, z-score = -3.04, R) >droVir3.scaffold_13049 12518799 99 + 25233164 GGCAUUUGACGCACUUGUGCAUGCCUAAUUAUCAGGACAAUUUGCUCUUGGAAUUUGCCUAUUAAUUAGGCUAUUGCAAACGGACGUAGACAU-UGACGA------------- ........(((..(...((((.(((((((((..(((.(((.((.(....).)).))))))..)))))))))...))))...)..)))......-......------------- ( -27.70, z-score = -2.73, R) >droMoj3.scaffold_6680 9837040 98 - 24764193 GGCAUUUGACGCACUUGUGCAUGCCUAAUUAUCAGGACAAUUUUCUCUAGGAAUUUGCCUAUUAAUUAG-CUAUUGCAAGCGGCCAUAGACGU-UGAUGG------------- ..((.(..(((((....)))..(((((((((..(((.(((.((((....)))).))))))..))))))(-((......)))))).......))-..))).------------- ( -24.50, z-score = -0.90, R) >droGri2.scaffold_15110 1363924 98 - 24565398 GGCAUUUGGUGCACUUGUGCAUGCCUAAUUAUUAGGACAAUUUGCUCUUGGACUUUGCCUAUUAAUUAG-CUAUUGCACACGGCCGUAGACAU-UGAUGA------------- ..((((..((((.(.((((((.((.((((((.((((.(((..(.(....).)..))))))).)))))))-)...)))))).))).....))..-.)))).------------- ( -25.30, z-score = -1.06, R) >consensus __GGCAGGAUGCACUUGUGCAUGCCUAAUUAUUGGGACAAUUUGCUCUUGGAAUUUGCCUAUUAAUUAGCCAUU_GCACACGGC___AGACGA_AGGCGA_____________ ........(((((....)))))(.(((((((.((((.(((.((.(....).)).))))))).))))))).).......................................... (-16.60 = -16.97 + 0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:22:51 2011