| Sequence ID | dm3.chr3L |
|---|---|
| Location | 13,092,258 – 13,092,350 |
| Length | 92 |
| Max. P | 0.855829 |
| Location | 13,092,258 – 13,092,350 |
|---|---|
| Length | 92 |
| Sequences | 7 |
| Columns | 92 |
| Reading direction | forward |
| Mean pairwise identity | 90.48 |
| Shannon entropy | 0.19333 |
| G+C content | 0.47355 |
| Mean single sequence MFE | -22.47 |
| Consensus MFE | -18.29 |
| Energy contribution | -18.46 |
| Covariance contribution | 0.16 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.81 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.93 |
| SVM RNA-class probability | 0.855829 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 13092258 92 + 24543557 CGGACAACAUCAAAGUGUUGACUUGACAUUUUGAACGACAUUUUAACCUGUUUAGCAGCAGCGUCCGAGCCGAGUCCACAGCCUUAGCCCAG (((((....((((((((((.....)))))))))).............((((......)))).))))).((..((........))..)).... ( -23.80, z-score = -2.52, R) >droAna3.scaffold_13337 10912810 92 - 23293914 CGGACAACAUCAAAGUGUUGACUUGACAUUUUGAACGACAUUUUAACCUGUUUAGUAGAGGCGUCCGAACCGAGUCCAAGUCCAUAGUCCAU .((((....((((((((((.....))))))))))..(((.......(((.(.....).))).(..(.......)..)..)))....)))).. ( -21.00, z-score = -1.21, R) >droEre2.scaffold_4784 13100626 92 + 25762168 CGGACAACAUCAAAGUGUUGACUUGACAUUUUGAACGACAUUUUAACCUGUUUAGCAGCAGCGUCCGAGCCUAGUCCGCAGCCUUAGCCCAG (((((....((((((((((.....)))))))))).............((((......)))).))))).((..((........))..)).... ( -21.80, z-score = -1.52, R) >droYak2.chr3L 13175817 92 + 24197627 CGGACAACAUCAAAGUGUUGACUUGACAUUUUGAACGACAUUUUAACCUGUUUAGCAGCAGCGUCCGAGCCGAGUCCACAGCCUUAGCCCAG (((((....((((((((((.....)))))))))).............((((......)))).))))).((..((........))..)).... ( -23.80, z-score = -2.52, R) >droSec1.super_0 5267908 92 + 21120651 CGGACAACAUCAAAGUGUUGACUUGACAUUUUGAACGACAUUUUAACCUGUUUAGCAGCGGCGUCCGAGCCGAGUCCACAGCCUUAGCCCAG .((((....((((((((((.....)))))))))).............(((.....)))((((......)))).))))............... ( -25.10, z-score = -2.29, R) >droSim1.chr3L 12483685 92 + 22553184 CGGACAACAUCAAAGUGUUGACUUGACAUUUUGAACGACAUUUUAACCUGUUUAGCAGCAGCGUCCGAGCCGAGUCCACAGCCUUAGCCCAG (((((....((((((((((.....)))))))))).............((((......)))).))))).((..((........))..)).... ( -23.80, z-score = -2.52, R) >droWil1.scaffold_180698 6581560 85 + 11422946 CGGACAACAUCAAAGUGUUGACUUGACAUUUUGAACGACAUUUUAACCUGUUUAGCAGAAGCGGCCAAAGCCAAAACCAAGCCAA------- .((.((((((....)))))).((((...(((((...((((........))))...)))))..(((....))).....))))))..------- ( -18.00, z-score = -1.36, R) >consensus CGGACAACAUCAAAGUGUUGACUUGACAUUUUGAACGACAUUUUAACCUGUUUAGCAGCAGCGUCCGAGCCGAGUCCACAGCCUUAGCCCAG (((((....((((((((((.....)))))))))).............(((.....)))....)))))......................... (-18.29 = -18.46 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:22:46 2011