| Sequence ID | dm3.chr3L |
|---|---|
| Location | 13,090,888 – 13,090,985 |
| Length | 97 |
| Max. P | 0.654079 |
| Location | 13,090,888 – 13,090,985 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 81.80 |
| Shannon entropy | 0.31472 |
| G+C content | 0.41912 |
| Mean single sequence MFE | -28.98 |
| Consensus MFE | -18.69 |
| Energy contribution | -18.92 |
| Covariance contribution | 0.22 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.654079 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 13090888 97 - 24543557 ---------AUUUUUGUUGGCGCAC--------ACAUACAUCGAGGGAG-----ACCAUAGCACACAUUUCCUUCGAAUUUUCUGUUCUAAUUGAGUAAGAAGUGUGUGCGGUGAGGUU ---------.....(.(((.(((((--------((((...(((((((((-----(............))))))))))...((((..((.....))...))))))))))))).))).).. ( -30.10, z-score = -2.66, R) >droSim1.chr3L 12482348 97 - 22553184 ---------AUUUUUGUUGGCGCAC--------ACAUACAUCGAGGGAG-----ACCAUAGCACACAUUUCCUUCGAAUUUUCUGUUCUAAUUGAGUAAGAAGUGUGUGCGGUGAGGUU ---------.....(.(((.(((((--------((((...(((((((((-----(............))))))))))...((((..((.....))...))))))))))))).))).).. ( -30.10, z-score = -2.66, R) >droSec1.super_0 5266545 97 - 21120651 ---------AUUUUUGUUGGCGCAC--------ACAUACAUCGAGGGAG-----ACCAUAGCACACAUUUCCUUCGAAUUUUCUGUUCUAAUUGAGUAAGAAGUGUGUGCGGUGAGGUU ---------.....(.(((.(((((--------((((...(((((((((-----(............))))))))))...((((..((.....))...))))))))))))).))).).. ( -30.10, z-score = -2.66, R) >droYak2.chr3L 13174412 110 - 24197627 ---------AUUUUUGUUGGCGCACACAUGCAUACAUACAUCUAGGGAGACCAUACCAUAGCACACAUUUCCUUCGAAUUUUCUGUUCUAAUUGAGUAAGAAGUGUGUGCGGUGAGGUU ---------.....(((..(((......)))..)))..((((..((....))........(((((((((((.(((((..............)))))...)))))))))))))))..... ( -27.64, z-score = -0.99, R) >droEre2.scaffold_4784 13099228 114 - 25762168 AUUUUUGUUGGCUCGGCUCACACAUACACAUACACGUGCAUCUAGGGAG-----ACCAUAGCACACAUUUCCUUCGAAUUUUCUGUUCUAAUUGAGUAAGAAGUGUGUGCGGUGAGGUU ................(((((.....(((......)))......((...-----.))...(((((((((((.(((((..............)))))...))))))))))).)))))... ( -30.34, z-score = -1.05, R) >droAna3.scaffold_13337 10911318 103 + 23293914 ---------AUUUUGGUUGGCAGACACACACAUA-GCACAACACAACAC-----AGCACA-CACACAUUUCCUUUGAAUUUUCUGUUCUAAUUGAGUAAGAAGUGUGUGCGGUGAGGUU ---------...(((((((((.............-)).)))).)))(((-----.(((((-(((.((.......))....((((..((.....))...)))))))))))).)))..... ( -25.62, z-score = -0.89, R) >consensus _________AUUUUUGUUGGCGCAC________ACAUACAUCGAGGGAG_____ACCAUAGCACACAUUUCCUUCGAAUUUUCUGUUCUAAUUGAGUAAGAAGUGUGUGCGGUGAGGUU ......................................((((...((........))...((((((((((((((.((((.....)))).....)))...)))))))))))))))..... (-18.69 = -18.92 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:22:45 2011