Locus 7218

Sequence ID dm3.chr3L
Location 13,058,570 – 13,058,637
Length 67
Max. P 0.931128
window9935

overview

Window 5

Location 13,058,570 – 13,058,637
Length 67
Sequences 5
Columns 67
Reading direction forward
Mean pairwise identity 93.99
Shannon entropy 0.10107
G+C content 0.53210
Mean single sequence MFE -21.50
Consensus MFE -21.28
Energy contribution -21.28
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.52
Structure conservation index 0.99
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.36
SVM RNA-class probability 0.931128
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 13058570 67 + 24543557
UACGUACCUGGAGGAGCUGCGUAUGCAAAUUCACCCACCGACUGCAAAUGUCAGCUAUGUCAGGGCU
......(((((...((((((((.((((...((.......)).)))).))).)))))...)))))... ( -21.50, z-score =  -1.56, R)
>droSim1.chr3L 12450288 67 + 22553184
UACGUACCUGGAGGAGCUGCGUAUGCAAAUUCACCCACCGACUGCAAAUGCCAGCUAUGUCAGGGCU
......(((((...((((((((.((((...((.......)).)))).))).)))))...)))))... ( -21.50, z-score =  -1.43, R)
>droSec1.super_0 5230171 67 + 21120651
UACGUACCUGGAGGAGCUGCGUAUGCAAAUUCACCCACCGACUGCAAAUGCCAGCUAUGUCAGGGCU
......(((((...((((((((.((((...((.......)).)))).))).)))))...)))))... ( -21.50, z-score =  -1.43, R)
>droYak2.chr3L 13140989 63 + 24197627
CACGUACCUGGAGGAGCUGCGUAUGCAAAUUCA----CCGACUGCAAAUGCCAGCUGUGUCAGGGCU
......((((..(.((((((((.((((......----.....)))).))).))))).)..))))... ( -21.50, z-score =  -1.14, R)
>droEre2.scaffold_4784 13066531 63 + 25762168
UACGUACCUGGAGGAGCUGCGUAUGCAAAUUCA----ACGACUGCAAAUGCCAGCUAUGUCAGGGCU
......(((((...((((((((.((((......----.....)))).))).)))))...)))))... ( -21.50, z-score =  -2.06, R)
>consensus
UACGUACCUGGAGGAGCUGCGUAUGCAAAUUCACCCACCGACUGCAAAUGCCAGCUAUGUCAGGGCU
......(((((...((((((((.((((...((.......)).)))).))).)))))...)))))... (-21.28 = -21.28 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:22:43 2011