| Sequence ID | dm3.chr3L |
|---|---|
| Location | 13,037,410 – 13,037,523 |
| Length | 113 |
| Max. P | 0.550274 |
| Location | 13,037,410 – 13,037,523 |
|---|---|
| Length | 113 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 82.87 |
| Shannon entropy | 0.27242 |
| G+C content | 0.55243 |
| Mean single sequence MFE | -41.18 |
| Consensus MFE | -29.94 |
| Energy contribution | -29.74 |
| Covariance contribution | -0.20 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.550274 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 13037410 113 + 24543557 -GAAAAAAGGAAUUCAUUUAUUUUACGGGGGGGGGGGGGGUGAGUUUUAACCCCUC---UGUGGUGCGUGGGGG-CUGGAGUUGGCGCCCAAAUAAUCGAUAACCCGCCCCC--AGCAUC -.........................(((((((((((((((........)))))))---..((((...((((.(-((......))).))))....))))....))).)))))--...... ( -45.30, z-score = -1.23, R) >droEre2.scaffold_4784 13045548 105 + 25762168 GAAGAAAAGGGGCGAAUUUAAUC-----------GAGGGGUGCAUUUCAGCCCCAC---AGUGGUGCGUGGGGG-CUGGAGUUGGCGCCCAAAUAAUCGAUAACCCGCCCCCCAAGCAUC ........((((((......(((-----------((.(((((((((((((((((..---.(.....)...))))-)))))))..))))))......)))))....))))))......... ( -47.30, z-score = -3.38, R) >droYak2.chr3L 13118812 104 + 24197627 GAAAAAAAGGGGUUAAUUUAUUC-----------GAGGGGUGCAUUUUAACCCCAC---UGUGGUGCGUGGGGGGCUGGAGUUGGCGCCCAAAUAAUCGAUAACCCGCCCCC--AGCAUC ........((((((((..((((.-----------....))))....))))))))..---...(((((...((((((.((.((((.((..........)).))))))))))))--.))))) ( -37.70, z-score = -1.04, R) >droSec1.super_0 5209406 106 + 21120651 -GAAAAAAGGAAUUCGUGUAUUC----------GAGGGGGUGAGUUUUAACCCCGCCGAUGUGGUGCGUGGGGG-CUGGAGUUGGCGCCCAAAUAAUCGAUAGCCCGCCCCC--AGCAUC -.......((..((((......)----------)))(((((........))))).)).....(((((.((((((-(.((.((((.((..........)).))))))))))))--)))))) ( -39.80, z-score = -1.48, R) >droSim1.chr3L 12429400 106 + 22553184 -GAAAAAAGGAAUUCAUGUAUUC----------GAGGGGGUGAGUUUUAACCCCGCCGAUGUGUUGCGUGGGGG-CUGGAGUUGGCGCCCAAAUAAUCGAUAGCCCGCCCCC--AGCAUC -....................((----------(..(((((........)))))..))).....(((.((((((-(.((.((((.((..........)).))))))))))))--)))).. ( -35.80, z-score = -0.69, R) >consensus _GAAAAAAGGAAUUCAUUUAUUC__________GGGGGGGUGAGUUUUAACCCCAC___UGUGGUGCGUGGGGG_CUGGAGUUGGCGCCCAAAUAAUCGAUAACCCGCCCCC__AGCAUC ....................................(((((........)))))........(((((..(((((.(.((.((((.((..........)).))))))))))))...))))) (-29.94 = -29.74 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:22:40 2011