| Sequence ID | dm3.chr3L |
|---|---|
| Location | 13,036,034 – 13,036,192 |
| Length | 158 |
| Max. P | 0.658832 |
| Location | 13,036,034 – 13,036,192 |
|---|---|
| Length | 158 |
| Sequences | 12 |
| Columns | 191 |
| Reading direction | forward |
| Mean pairwise identity | 63.83 |
| Shannon entropy | 0.76507 |
| G+C content | 0.40179 |
| Mean single sequence MFE | -39.40 |
| Consensus MFE | -14.05 |
| Energy contribution | -13.58 |
| Covariance contribution | -0.47 |
| Combinations/Pair | 1.67 |
| Mean z-score | -1.05 |
| Structure conservation index | 0.36 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.658832 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 13036034 158 + 24543557 -------------------GUAAU---UCUGUGGGCUACGUCGAAGACCGAUUUCCGCUUGUUG-----CCAUGUGUCUAUUGGUUCAAA-UCGAAGCCCAAAGCAAUUUUUGAUACGACGGUCUCUGAU--UC-GGCAUU-CCACAGUCGUCUGAGUAACUUUUAC-GUGCAAUUACAAUGCAAUUAAAU -------------------(((((---((((((((((..((((.((((((......((.....)-----)..((((((..(((((....)-)))).((.....)).......)))))).)))))).))))--..-)))...-)))))).(((..(((...)))..))-)...))))))............. ( -37.80, z-score = -0.31, R) >droGri2.scaffold_15110 22984775 173 + 24565398 ----------------GGAAUUAGUUUAUCGUGGGCUUCAUCGAAGACCGUUUAGUGUUUACUUUUUACCCAUACGCUAAUUGGUUCAAA-AUGAAGCCGAAAGCAAUUUUUGAUACGACGGUCUCUGAUUCUUGAGCAUUUUGUCAGCCGUUUCAGUAACUUUUAC-GUGCAAUUACAAAUCAACCUAAU ----------------((((((((.(..(((((((((((((....(((((.(((((((...............))))))).)))))....-))))))))((((....))))...)))))..)...))))))))(((....(((((..(((((.............))-).))....))))))))....... ( -41.18, z-score = -1.66, R) >droVir3.scaffold_13049 12399575 148 + 25233164 -------------------------------UUGGCUGGUUCGAAGACCACAAAACGCUUUCUA-------UUAAGUUGCGUGGUUCAAAUACGAAGCCAAUAGCAAUUUUUGAUACGACGGUCUCUGAU--UUGUGCAUUUAGCCAGCAAUUUCAGUAACUUUAAC-GUGCAAUUACAUUUACAAUAU-- -------------------------------((((((((((.(((...((((((.((((.((((-------(((((((((.((((((......).)))))...)))))..)))))).)).)))....).)--)))))..)))))))))).......(((.(......-))))...........)))...-- ( -31.50, z-score = -0.45, R) >droMoj3.scaffold_6680 9695072 164 - 24764193 ----------------AGGAUAAUUGUUAGAUGGGCUACAUCGAAGACCAUUUAGUGUUUCU-------CCAUACGCCAAUUGGUUCAAA-AUGAAGCCCAAAGCAAUCUUUGAUACGACGGUCUCUGAU-CUUGAGCAUUCU-CCAGCCGUUUCAGUAACUUUUAC-GUGCAAUUACAAAUUAACUAAAC ----------------......((((((...((((((.(((....(((((.((.((((....-------....)))).)).)))))....-))).)))))).))))))..(((.((((..(((..((((.-..((.((.....-...))))..))))..)))....)-))))))................. ( -36.40, z-score = -1.03, R) >droWil1.scaffold_180698 6507284 152 + 11422946 ------------------------GAGACUCUCAGCCAAGUAAAAUUCUUGAUUUCGCUGAUUU-------GCCCGCCAGUUG--UAACAUUUUAUGGUGCAAGCAGUCC-----ACGUUUUUUUUUUUUUUUUACCCACU-UCGAGAUACUUCGAGUAAAGAGUGCUGCAAAACUAAAGAUUUUACGAAG ------------------------(((...)))......(((((((..(((.....((((.(((-------((..((((....--..........)))))))))))))..-----..(((((......((((((((.....-(((((....)))))))))))))......))))))))..))))))).... ( -27.74, z-score = 0.39, R) >droPer1.super_9 3617041 148 + 3637205 ----------------------AAAAGAUGUCUGGCUUUAUCGAAGACCGAUCUAUGUCAUUUG-----CAAUACGUUCAUUGGUUCAAA-AUGAAGCCCAAAGCAAUUUUUGUUACGACGGUCACUGAU--CUGUGCAUUCC-GCAGCCAUUUCAGUAACUUUUAC-GUGCAAUUACAU----------- ----------------------......(((..((((((((....(((((((..((((......-----....))))..)))))))....-))))))))....)))....((((.(((..(((.(((((.--.((.((.....-...))))..))))).)))....)-))))))......----------- ( -32.90, z-score = -0.61, R) >dp4.chrXR_group6 5306728 148 + 13314419 ----------------------AAAAGAUGUCUGGCUUUAUCGAAGACCGAUCUAUGUCAUUUG-----CAAUACGUUCAUUGGUUCAAA-AUGAAGCCCAAAGCAAUUUUUGUUACGACGGUCACUGAU--CUGUGCAUUCC-GCAGCCAUUUCAGUAACUUUUAC-GUGCAAUUACAU----------- ----------------------......(((..((((((((....(((((((..((((......-----....))))..)))))))....-))))))))....)))....((((.(((..(((.(((((.--.((.((.....-...))))..))))).)))....)-))))))......----------- ( -32.90, z-score = -0.61, R) >droAna3.scaffold_13337 10857674 155 - 23293914 ------GAAACUCCAAAAAGCCCA--GAUUCUGGGCUUUGUCGAAGACCGAUUUAC-----UUU-----UUAUAAGAAUAUUGGUUCAAA-ACGAAGCCCAAAGCAAUUUUUGUUACGACGGUCACUGAU--UCUGGCAUC--UCUAGCUUCUUCAGUAACUUUUAC-GUGCAAUUACA------------ ------..................--.....((((((((((....(((((((...(-----((.-----....)))...)))))))....-)))))))))).........((((.(((..(((.(((((.--...(((...--....)))...))))).)))....)-)))))).....------------ ( -37.20, z-score = -2.05, R) >droEre2.scaffold_4784 13044023 180 + 25762168 GUUAUUCAUAAUUAAUAAGGGAAACUGUUUGUGGGCUUCGUCGAAGACCGAUUUCCGCCUGUUG-----CCAUGUGUCUAUUGGUUCAAA-UCGAAGCCCAAAGCAAUUUUUGAUACGACGGUCUCUGAU--UC-GGCAUU-CCACAGCCGUCUUAGUAACUUUUAC-GUGCAAUUACAAUGUAAUGAAGU ....(((((.........((....))((((.(((((((((.....(((((((...(((.((...-----.)).)))...)))))))....-.))))))))))))).....(((.((((..(((..((((.--.(-(((...-.....))))..))))..)))....)-))))))..........))))).. ( -50.20, z-score = -2.17, R) >droYak2.chr3L 13117272 181 + 24197627 GUUAUUCAGAAUUAAUGGGGUAAACUGUUUGUGGGCUUCGUCGAAGACCGAUUUGCGCCUGUUG-----CCAUGUGUUUAUUGGUUCAAA-UCGAAGCCCAAAGCAAUUUUUGAUACGACGGUCUCUGAU--UC-GGCAUUUCCACAGUCGUCUUAGUAACUUUUAC-GUGCAAUUACAAAGUAAUAAAAC ..........((((.....((((..(((((.(((((((((.....(((((((..((((.((...-----.)).))))..)))))))....-.))))))))))))))....(((.((((..(((..((((.--.(-(((.........))))..))))..)))....)-))))))))))....))))..... ( -48.70, z-score = -1.74, R) >droSec1.super_0 5208001 170 + 21120651 GUCAUUCCC--UUCAAGAGGGAAA---ACUGUGGGCUUCGUCGAAGACCGAUUUCCGCCGUUUG-----CCAUGUGUCUAUUGGUUCAAA-UCGAAGCCCAAAGCAAUUUUUGAUACGACGGUCUCUGAU--UC-GGCAUU-CCACAGUCGUCUGAGUAACUUUUAC-GUGCAAUUACAAUGCAAU----- (((.(((((--((...))))))).---.((.(((((((((.....(((((((...(((......-----....)))...)))))))....-.))))))))).)).............)))(((..((.(.--.(-(((...-.....))))..).))..))).....-.((((.......))))..----- ( -46.90, z-score = -1.18, R) >droSim1.chr3L 12427978 175 + 22553184 GUCAUUCCC--UUCAAGAGGGAAA---ACUGUGGGCUUCGUCGAAGACCGAUUUUCGCCUGUUG-----CCAUGUGUUCAUUGGUUCAAA-UCGAAGCCCAAAGCAAUUUUUGAUACGACGGUCUCUGAU--UC-GGCAUU-CGACAGUCGUCUGAGUAACUUUUAC-GUGCAAUUACAAUGCAAUGAAAU (((.(((((--((...))))))).---.((.(((((((((.....(((((((...(((.((...-----.)).)))...)))))))....-.))))))))).)).............)))(((..((.(.--.(-(((...-.....))))..).))..)))(((..-.((((.......))))...))). ( -49.40, z-score = -1.15, R) >consensus ___________________G_AAA__GAUUGUGGGCUUCGUCGAAGACCGAUUUACGCCUGUUG_____CCAUACGUUUAUUGGUUCAAA_ACGAAGCCCAAAGCAAUUUUUGAUACGACGGUCUCUGAU__UC_GGCAUU_CCACAGCCGUUUCAGUAACUUUUAC_GUGCAAUUACAAUGCAAU_AAA_ ................................(((((.((.....(((((((...(((...............)))...)))))))......)).)))))...(((......(.(((........(((.................)))........))).)........)))................... (-14.05 = -13.58 + -0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:22:39 2011