| Sequence ID | dm3.chr3L |
|---|---|
| Location | 13,027,548 – 13,027,600 |
| Length | 52 |
| Max. P | 0.994870 |
| Location | 13,027,548 – 13,027,600 |
|---|---|
| Length | 52 |
| Sequences | 6 |
| Columns | 55 |
| Reading direction | reverse |
| Mean pairwise identity | 79.42 |
| Shannon entropy | 0.37299 |
| G+C content | 0.48729 |
| Mean single sequence MFE | -17.60 |
| Consensus MFE | -13.27 |
| Energy contribution | -13.58 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.64 |
| Mean z-score | -2.63 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.74 |
| SVM RNA-class probability | 0.994870 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 13027548 52 - 24543557 UGGCUUUUGGCUGGGGACUCUACGGAAUUCUGGGAA--AGGCUUUAAAA-GUACG .((((((...((.((((.((....)).)))).)).)--)))))......-..... ( -13.40, z-score = -1.54, R) >droPer1.super_9 3608831 54 - 3637205 -UGACUCUGGGGGGAACUUUUUCAGAGUUCUAAGAACUGGACGUAGAAACGUACG -.(((((((..((.....))..)))))))...........((((....))))... ( -12.70, z-score = -0.53, R) >droEre2.scaffold_4784 13035012 51 - 25762168 -UGCCUUUGGCUGGGGACUCUACGGAGUUCUAGGAA--AGGGUUUAAAA-GUACG -.((((((..((.(((((((....))))))).)).)--)))))......-..... ( -18.70, z-score = -2.90, R) >droYak2.chr3L 13108213 51 - 24197627 -UGCUUUUGGCUGGGGACUCUACGGAGUUCUGGGAA--AAGGUUUAAAA-GUACG -.((((((..((.(((((((....))))))).)).)--)))))......-..... ( -18.40, z-score = -3.67, R) >droSec1.super_0 5199225 52 - 21120651 UGGCUUUUGGCCGGGGACUCUACGGAGUUCUGGGAA--AGGCUUUAAAA-GUACG .((((((...((.(((((((....))))))).)).)--)))))......-..... ( -21.20, z-score = -3.52, R) >droSim1.chr3L 12417610 52 - 22553184 UGGCUUUUGGCCGAGGACUCUACGGAGUUCUGGGAA--AGGCUUUAAAA-GUACG .((((((...((.(((((((....))))))).)).)--)))))......-..... ( -21.20, z-score = -3.63, R) >consensus _GGCUUUUGGCUGGGGACUCUACGGAGUUCUGGGAA__AGGCUUUAAAA_GUACG .(((((....((.(((((((....))))))).))....)))))............ (-13.27 = -13.58 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:22:37 2011