Locus 7211

Sequence ID dm3.chr3L
Location 13,002,210 – 13,002,318
Length 108
Max. P 0.508836
window9924

overview

Window 4

Location 13,002,210 – 13,002,318
Length 108
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 76.10
Shannon entropy 0.44265
G+C content 0.50510
Mean single sequence MFE -33.88
Consensus MFE -23.72
Energy contribution -22.57
Covariance contribution -1.16
Combinations/Pair 1.48
Mean z-score -0.83
Structure conservation index 0.70
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.03
SVM RNA-class probability 0.508836
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 13002210 108 - 24543557
UGGGGUUAUUAAUUCGCUUGUAUAAAGGCGCUCAGCAUGGUGAUCCCUCAGGUGCUUCUCCAGGUGCGAUUCGUUUGAGAAGGCAAUGGGGCAAU---------AGAGGCACAGGCG
.((((((((((....((((......))))((...)).))))))))))....(((((((((((..(((..(((......))).))).)))......---------))))))))..... ( -34.90, z-score =  -0.86, R)
>droMoj3.scaffold_6500 5194549 117 - 32352404
UUGUGUGUUCCUUUCACUACUGUGCAGGCGGGUGGCAAGUGAAUGAAUACAUGAAUUCCAUAGCAAUUGGGCAGCUAGGAAGGCAGUCAGGCAGUCAUUCAGAGGGGGGCAGAGGCG
.(.(.((((((((((.(((((.((....)))))))....(((((((.....(((.((((.((((.........)))))))).....))).....))))))))))))))))).).).. ( -34.90, z-score =  -0.43, R)
>droEre2.scaffold_4784 13008649 108 - 25762168
UGGGGUUAUUAAUUCGCUUGAAUUGAAGCGCUCAGCAUGGUGAUCCCUCAGGUGCUUCUCCAGAUGGGAUUCGUUGGAGAAGGCAAUGGGGCAAU---------AGAGGCAUAGGCG
(((((((.(((((((....)))))))))).))))((...(((.(((((((..((((((((((.(((.....)))))))))).))).)))))....---------.))..)))..)). ( -33.60, z-score =  -0.51, R)
>droYak2.chr3L 13080816 108 - 24197627
UGGGGUUAUUAAUUCGCUUGAAUAAAAGCGCUCAGCAUGGUGAUCCUUUAGGUGCUUCUCCAGAUGGGAUUCGUUUGAAAAAGCAAUGGGGCAAU---------AGAGGCACAGGCG
((((..........(((((......)))))))))((...(((..((((((..(((((((((.....)))...((((....))))...)))))).)---------))))))))..)). ( -30.50, z-score =  -0.88, R)
>droSec1.super_0 5174034 108 - 21120651
UGGGAUUAUUAAUUCGCUUGUAUAAAGGCGCUCAGCAUGGUGAUCCCUCAGGUGCUUCUCCAGGUGCGAUUCGUUUGAGAAGGCAAUGGGGCAAU---------AGAGGCACAGACG
.((((((((((....((((......))))((...)).))))))))))....(((((((((((..(((..(((......))).))).)))......---------))))))))..... ( -35.50, z-score =  -1.49, R)
>droSim1.chr3L 12390050 108 - 22553184
UGGGGUUAUUAAUUCGCUUGUGUAAAGGCGCUCAGCAUGGUGAUCCUUCAGGUGCUUCUCCAGGUGCGAUUCGUUUGAGAAGGCAAUGGGGCAAU---------AGAGGCACAGGGG
.((((((((((....(((.((((....))))..))).))))))))))((..(((((((((((..(((..(((......))).))).)))......---------))))))))..)). ( -33.90, z-score =  -0.84, R)
>consensus
UGGGGUUAUUAAUUCGCUUGUAUAAAGGCGCUCAGCAUGGUGAUCCCUCAGGUGCUUCUCCAGGUGCGAUUCGUUUGAGAAGGCAAUGGGGCAAU_________AGAGGCACAGGCG
.((((((((((...(((((......))))).......))))))))))....((((((((.((((((.....)))))).....((......))............))))))))..... (-23.72 = -22.57 +  -1.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:22:33 2011