Locus 7210

Sequence ID dm3.chr3L
Location 13,002,060 – 13,002,180
Length 120
Max. P 0.533289
window9923

overview

Window 3

Location 13,002,060 – 13,002,180
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 89.33
Shannon entropy 0.18405
G+C content 0.52000
Mean single sequence MFE -35.05
Consensus MFE -26.89
Energy contribution -26.89
Covariance contribution 0.00
Combinations/Pair 1.15
Mean z-score -1.74
Structure conservation index 0.77
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.08
SVM RNA-class probability 0.533289
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 13002060 120 + 24543557
GAGAGCAUAGCGGAACUGGAUUUAGCGAAACCCACAGACUCCAGGACCAAGCCCAACUUCGAGUUAAACUACUCACCCACUCCAAGGUGGAAGAUAUCUCGACGGAGAGCUGGGAUGCUG
...(((((...((..(((((.((.(.(.....).).)).)))))..))...((((.((((((((......))))...((((....))))))))...((((....))))..))))))))). ( -35.90, z-score =  -1.81, R)
>droEre2.scaffold_4784 13008499 120 + 25762168
GAAAGCAUACCAGAACUGGAGUCAGCGAAAGCCACAACUUCCAGGAACAAGCAUAACUUCGAGUUAAACUACUCACCUACUCCACGGUGGAAGAUAUCUCGACGGAGAGCAGGGAUGCUG
...(((((.((....(((((((..((....))....)).)))))......((....((((((((......))))(((........))).))))...((((....)))))).)).))))). ( -36.30, z-score =  -2.92, R)
>droYak2.chr3L 13080666 120 + 24197627
GAAAGCAUACCAGAAUUGGAGUCAGCGAAACCUACAACCUCCAAGAACGAGCGUAACUUCGAGUUAAACUACUCACCCACUCCACGGUGGAGGAUAUCUCGACGAAGAGCUGGAAUGCUG
...(((((.((((..((((((.................))))))...((((.(((.((((((((......))))...((((....)))))))).)))))))........)))).))))). ( -34.23, z-score =  -2.47, R)
>droSec1.super_0 5173884 120 + 21120651
GAGAGCAUACCGGAACUGGAUUUAGCGAAACCCACAGCCCCCAGGACCAAGCCCAACUUCGAGUUAAGCUACUCACCCACUCCAAGGUGGAAGAUAUCUCGUCGAAGAGCGGGGAUGCUG
...(((((...((..((((.....((..........))..))))..))...(((..((((((((......))))..(((((....))))).............))))....)))))))). ( -32.60, z-score =  -0.44, R)
>droSim1.chr3L 12389900 120 + 22553184
GAGAGCAUACCGGAACUGGAUUUAGCGAAACCCACAGCCUCCAGGACCAAGCCCAACUUCGAGUUAAGCUACUCACCCACUCCAAGGUGGAAGAUAUCUCGUCGGAGAGCUGGGAUGCUG
...(((((...((..(((((....((..........)).)))))..))...((((.((((((((......))))...((((....))))))))...((((....))))..))))))))). ( -36.20, z-score =  -1.07, R)
>consensus
GAGAGCAUACCGGAACUGGAUUUAGCGAAACCCACAGCCUCCAGGACCAAGCCCAACUUCGAGUUAAACUACUCACCCACUCCAAGGUGGAAGAUAUCUCGACGGAGAGCUGGGAUGCUG
...(((((.((((..(((((...................)))))............((((((((......))))..(((((....))))).............))))..)))).))))). (-26.89 = -26.89 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:22:32 2011