Locus 721

Sequence ID dm3.chr2L
Location 5,090,566 – 5,090,661
Length 95
Max. P 0.932131
window957

overview

Window 7

Location 5,090,566 – 5,090,661
Length 95
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 68.77
Shannon entropy 0.44747
G+C content 0.42108
Mean single sequence MFE -19.60
Consensus MFE -11.56
Energy contribution -11.88
Covariance contribution 0.31
Combinations/Pair 1.09
Mean z-score -1.86
Structure conservation index 0.59
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.37
SVM RNA-class probability 0.932131
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2L 5090566 95 + 23011544
----------------------UAAAUGAUUGUUUAAAUGAAGAUUCCCAUUUCUAAAACCACUCUAAAGAUGACC---CCGUUUUCUCGCGGUGCAGUUACCCAACAUGCGCUGCUUAC
----------------------.........(((((((((........)))))...)))).......((((((...---.))))))...(((((((((((....))).)))))))).... ( -16.80, z-score =  -1.44, R)
>droSim1.chr2L_random 315948 84 + 909653
----------------------GAAAUGAUUGUUUAAAUGAAGAUUCCCAUUUCGAAAACCACUC--------------CUGUUUUCUCGCGGUGCAGUUACCCAACAUGCGCUGCUUAC
----------------------((((((...((((......))))...))))))((((((.....--------------..))))))..(((((((((((....))).)))))))).... ( -23.10, z-score =  -3.90, R)
>droSec1.super_5 3177456 84 + 5866729
----------------------CAUAUGAUUCUUUCAAUGAAGAUUACCAUUUCGAAAACCACUC--------------CUGUUUUCUCGCGGUGCAGUUACCCAACAUGCGCUGCUUAC
----------------------(((.(((.....))))))..............((((((.....--------------..))))))..(((((((((((....))).)))))))).... ( -19.00, z-score =  -2.79, R)
>droEre2.scaffold_4929 5170838 120 + 26641161
ACUUCACACUCAAAUGUUAGUAAAAAUGAUAUCUAUACAUGAGACACGCAUUACUAAAACCACUCUGAAGAUGAGCUCGGUGCUUUCUCGCAGUGCAGUUACCCAACACGCGAUGCUUAC
........((((..((((((............))).)))))))....((((..(......((((.(((.((.((((.....))))))))).))))..(((....)))..)..)))).... ( -19.50, z-score =   0.68, R)
>consensus
______________________AAAAUGAUUGUUUAAAUGAAGAUUCCCAUUUCGAAAACCACUC______________CUGUUUUCUCGCGGUGCAGUUACCCAACAUGCGCUGCUUAC
.........................................................................................(((((((((((....))).)))))))).... (-11.56 = -11.88 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:18:00 2011