| Sequence ID | dm3.chr3L |
|---|---|
| Location | 12,996,879 – 12,996,954 |
| Length | 75 |
| Max. P | 0.998529 |
| Location | 12,996,879 – 12,996,954 |
|---|---|
| Length | 75 |
| Sequences | 6 |
| Columns | 75 |
| Reading direction | reverse |
| Mean pairwise identity | 72.35 |
| Shannon entropy | 0.52021 |
| G+C content | 0.41675 |
| Mean single sequence MFE | -11.93 |
| Consensus MFE | -8.14 |
| Energy contribution | -8.67 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.31 |
| Mean z-score | -2.51 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.39 |
| SVM RNA-class probability | 0.998529 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 12996879 75 - 24543557 CCGCUGUGUCAGCGAAUUGUAAUACCCCUUUGCCACUCGCACAUGUAGCUAUUAUUUCUUUCCCAAUUUUUUUUU ..((((..(..((((...((((.......))))...))))..)..)))).......................... ( -12.60, z-score = -2.86, R) >droSim1.chr3L 12384591 75 - 22553184 CCGCUGUGUCAGCGAACUGUAAUACCCCUUUGCCACUCGCACAUGUAGCUAUUAUUUCUUUCCCCAUUUUCUUUU ..((((..(..((((...((((.......))))...))))..)..)))).......................... ( -12.60, z-score = -3.00, R) >droSec1.super_0 5168672 70 - 21120651 CCGCUGUGUCAGCGAAUUGUAAUACCCCUUUGCCACUCGCACAUGUAGCUAUUAUUUCUUUCCCCAUUUU----- ..((((..(..((((...((((.......))))...))))..)..)))).....................----- ( -12.60, z-score = -2.95, R) >droYak2.chr3L 13074817 72 - 24197627 CCGCUGUGUCAGCGAAUUGUAAUACCCC-UUGCCACUCGCACAUGUAGCUAUUAUUUCCUUUAUUUUUAUUUU-- ..((((..(..((((...((((......-))))...))))..)..))))........................-- ( -12.30, z-score = -2.60, R) >droEre2.scaffold_4784 13003381 68 - 25762168 CCGCUGUGUCAGCGAAUUGCAAUACCCCUUUGCCACUCGCACAUGUAGCUAUUAUUCCUUUUCCUUUU------- ..((((..(..((((...((((.......))))...))))..)..))))...................------- ( -14.60, z-score = -3.47, R) >droWil1.scaffold_180698 6130340 59 + 11422946 ----UUUCUUUGUAA---GUGAUACCCAU---ACACACAUACACAAAGGGAUACCUCGAAUUUCUGCUA------ ----(..((((((..---(((........---...)))....))))))..)..................------ ( -6.90, z-score = -0.20, R) >consensus CCGCUGUGUCAGCGAAUUGUAAUACCCCUUUGCCACUCGCACAUGUAGCUAUUAUUUCUUUCCCUAUUUU_____ ..((((..(..((((...((((.......))))...))))..)..)))).......................... ( -8.14 = -8.67 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:22:31 2011