Locus 7208

Sequence ID dm3.chr3L
Location 12,993,857 – 12,993,921
Length 64
Max. P 0.988939
window9921

overview

Window 1

Location 12,993,857 – 12,993,921
Length 64
Sequences 6
Columns 64
Reading direction forward
Mean pairwise identity 92.50
Shannon entropy 0.14170
G+C content 0.37500
Mean single sequence MFE -17.75
Consensus MFE -16.84
Energy contribution -16.65
Covariance contribution -0.19
Combinations/Pair 1.25
Mean z-score -2.42
Structure conservation index 0.95
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 2.34
SVM RNA-class probability 0.988939
Prediction RNA
WARNING Out of training range. z-scores are NOT reliable.

Download alignment: ClustalW | MAF

>dm3.chr3L 12993857 64 + 24543557
UGCGCAUUUUGGAUUGUGGCAUUCGGAAAAUUUAGCUGAAUGCUUCAGUAUUUUAAAGAUGUUG
...(((((((..((((.(((((((((.........))))))))).))))......))))))).. ( -18.30, z-score =  -2.76, R)
>droSim1.chr3L 12381634 64 + 22553184
UGCGCAUUUUGGAUUGUGGCAUUCGGAAAAUUUAGCUGAAUGCUUUAGUAUUUUAAAGAUGCUG
...(((((((..((((.(((((((((.........))))))))).))))......))))))).. ( -19.10, z-score =  -2.99, R)
>droSec1.super_0 5165651 64 + 21120651
UGCGCAUUUUGGAUUGUGGCAUUCGGAAAAUUUAGCUGAAUGCUUUAGUAUUUUAAAGAUGUUG
...(((((((..((((.(((((((((.........))))))))).))))......))))))).. ( -16.60, z-score =  -2.41, R)
>droYak2.chr3L 13071695 64 + 24197627
UGCGCAUUUUGGAUUGUGGCAUUCGGAAAAUUUAGCUGGAUGCUUUAGUAUUUUAAAGAUGCUG
...(((((((..((((.(((((((((.........))))))))).))))......))))))).. ( -18.60, z-score =  -2.71, R)
>droEre2.scaffold_4784 13000320 64 + 25762168
UGCGCAUUUUGGAUUGUGGCAUUCGGAAAAUUUAGCCGGAUGCUUUAGUACUUUAAAGAUGCUG
...(((((((((((((.(((((((((.........))))))))).)))).))...))))))).. ( -20.80, z-score =  -3.19, R)
>droAna3.scaffold_13337 6528152 64 - 23293914
UGCGUAUUUCGGAUUGUGGCAUUCCGAAAAUUUGGCUGGUUGCUUUAGUAUUUUAAGGAUUCGG
......(((((((.((...)).)))))))......((((...((((((....))))))..)))) ( -13.10, z-score =  -0.47, R)
>consensus
UGCGCAUUUUGGAUUGUGGCAUUCGGAAAAUUUAGCUGAAUGCUUUAGUAUUUUAAAGAUGCUG
...(((((((..((((.(((((((((.........))))))))).))))......))))))).. (-16.84 = -16.65 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:22:30 2011