| Sequence ID | dm3.chr3L |
|---|---|
| Location | 12,961,245 – 12,961,336 |
| Length | 91 |
| Max. P | 0.564231 |
| Location | 12,961,245 – 12,961,336 |
|---|---|
| Length | 91 |
| Sequences | 7 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 70.41 |
| Shannon entropy | 0.59516 |
| G+C content | 0.49286 |
| Mean single sequence MFE | -26.87 |
| Consensus MFE | -10.90 |
| Energy contribution | -12.60 |
| Covariance contribution | 1.70 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.31 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.564231 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 12961245 91 - 24543557 ACAGUAUAUAUGUCUGUACAUAAAAAUGUCUCCUUGGGUGGACUUCCGCCGGAAAUGGA----GUGCAGAACGAGCAGCACUUGU-CUGCUGAUAU .(((((.(((.((((((.........(((((((((.(((((....))))).))...)))----).)))......)))).)).)))-.))))).... ( -27.36, z-score = -1.81, R) >droSim1.chr3L_random 569227 91 - 1049610 ACAGUAUAUAUGUCUGUACAUAAAAGUGUCUCCUUGGGUGGACUUCCGCCGGAAAUGGA----GUGCAGAACGAGCAGCACUUGU-CUGCUGAUAU .(((((..(((((....))))).((((((((((((.(((((....))))).))...)))----)(((.......)))))))))..-.))))).... ( -27.90, z-score = -1.62, R) >droSec1.super_0 5132901 91 - 21120651 ACAGUAUAUAUGUCUGUACAUAAAAGUGUCUCCUUGGGUGGACUUCCGCCGGAAAUGGA----GUGCAGAACGAGCAGCACUUGU-CUGCUGAUAU .(((((..(((((....))))).((((((((((((.(((((....))))).))...)))----)(((.......)))))))))..-.))))).... ( -27.90, z-score = -1.62, R) >droYak2.chr3L 13038793 91 - 24197627 ACAGCAUAUAUGGCUGUACAUAAAAAUGUCUCCUUGGGUGGACUUCCGGCGGAAAUGGA----GUGCAGAACGAGCAGCACUUGU-CUGCUGAUAU .(((((.(((..(((((.........(((((((((.(.(((....))).).))...)))----).)))......)))))...)))-.))))).... ( -27.06, z-score = -1.22, R) >droEre2.scaffold_4784 12968083 90 - 25762168 ACA-CACAUAUGUCUGCACAUAAAAAUGUCUCCUUGGGUGGACUUCCGCCGGAAAUGGA----GUGCAGAACGAGCAGCACUUGU-CUGCUGAUAU ...-........(((((((((....))))((((((.(((((....))))).))...)))----).)))))...((((((....).-)))))..... ( -28.00, z-score = -1.85, R) >droAna3.scaffold_13337 6496046 77 + 23293914 --------------AAAAUGUCUGGCCCCCGCGCGAGGAGCACUUCCGCCGGAAAUGGA----GUGCCGAAUGAGCGUCACUCGU-CUGCUGAUAU --------------...(((((.(((..(((.(((.(((....))))))))).....((----(((.((......)).)))))..-..)))))))) ( -23.70, z-score = -0.40, R) >droVir3.scaffold_13049 2675335 96 + 25233164 GGAGUGUACAAGCUCGCACACAAGCACACACACACAGACAGGCACAGACGUUUAAAGGAAUAGGCGCACAAUGAUGCCAGCCAGCGCUGCUGGCAA .((((......))))((......))...............((((((..((((((......)))))).....)).)))).((((((...)))))).. ( -26.20, z-score = -0.66, R) >consensus ACAGUAUAUAUGUCUGUACAUAAAAAUGUCUCCUUGGGUGGACUUCCGCCGGAAAUGGA____GUGCAGAACGAGCAGCACUUGU_CUGCUGAUAU ....................................(((((....)))))...............((((.(((((.....))))).))))...... (-10.90 = -12.60 + 1.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:22:21 2011