| Sequence ID | dm3.chr2L |
|---|---|
| Location | 5,087,932 – 5,088,050 |
| Length | 118 |
| Max. P | 0.586356 |
| Location | 5,087,932 – 5,088,050 |
|---|---|
| Length | 118 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 83.95 |
| Shannon entropy | 0.27892 |
| G+C content | 0.34931 |
| Mean single sequence MFE | -23.10 |
| Consensus MFE | -15.46 |
| Energy contribution | -16.78 |
| Covariance contribution | 1.32 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.586356 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 5087932 118 + 23011544 --ACCAGAGAGAGAUGGAAACGCAAAAGUUGCUAAACAAAUGUGCGCAAAUAACAAAGUUAUUUGGCAACUAUUAACCCAAUAAUAUAAUUGGGUGGGUCGGCGAAAAACAGACAAAUUG --.(((........)))...(((...((((((...((....))...((((((((...))))))))))))))....(((((((......)))))))......)))................ ( -27.40, z-score = -2.51, R) >droEre2.scaffold_4929 5168219 114 + 26641161 ------ACAAGAGAUGGAAACGCAAAAGUUUCUAAACAAAUGUGAGCAAAUAAUAAAGUUAUUUGGCAACUAUUUACCCAAUAACAUAAUAGAGUGAGACAGGGAAAAAUAGAUAAAUUC ------........(((((((......)))))))........((..((((((((...)))))))).)).((((((.(((.....(((......))).....)))..))))))........ ( -18.50, z-score = -2.07, R) >droYak2.chr2L 11887985 114 - 22324452 ------ACAUGAGAGCAAAACACAAAAGUUUCUCCACAAGUGUGCGCAAAUAAUAAAGUUAUUUGGCAACUAUUUACCCAAUAAUAUAAAUGAGUGAGGAGGGAAGAAACAGACAAAUUC ------.....................((((((((.......(((.((((((((...))))))))))).((.(((((.((..........)).))))).)))).)))))).......... ( -20.20, z-score = -1.33, R) >droSec1.super_5 3174873 120 + 5866729 ACAAGAGAGCGAGAUGGAAACGCAAAAGUUUCUAAACAAAUGUGCGCAAAUAAUAAAGUUAUUUGGCAACUAUUUAGCCAAUAAUAUAAUUGGGUGGAGCGGCGAAAAACAGACAAAUUG ........((.((.(((((((......)))))))........(((.((((((((...))))))))))).)).((((.(((((......))))).)))))).................... ( -24.00, z-score = -1.57, R) >droSim1.chr2L_random 313375 120 + 909653 ACAAGAGAGCGAGAUGGAAACGCAAAAGUUUCUAAACAAAUGUGCGCAAAUAAUAAAGUUAUUUGGCACCUAUUUAGCCAAUAAUAUAAUUGGGUGGGGCGGCGAAAAACAGACAAAUUG ........((....(((((((......))))))).......((((.((((((((...))))))))))))...((((.(((((......))))).)))))).................... ( -25.40, z-score = -1.50, R) >consensus __A__AGAGAGAGAUGGAAACGCAAAAGUUUCUAAACAAAUGUGCGCAAAUAAUAAAGUUAUUUGGCAACUAUUUACCCAAUAAUAUAAUUGGGUGGGGCGGCGAAAAACAGACAAAUUG ..............(((((((......)))))))........(((.((((((((...)))))))))))....((((((((((......))))))))))...................... (-15.46 = -16.78 + 1.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:18:00 2011