| Sequence ID | dm3.chr2L |
|---|---|
| Location | 553,467 – 553,568 |
| Length | 101 |
| Max. P | 0.830199 |
| Location | 553,467 – 553,568 |
|---|---|
| Length | 101 |
| Sequences | 5 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 79.39 |
| Shannon entropy | 0.35067 |
| G+C content | 0.38521 |
| Mean single sequence MFE | -24.10 |
| Consensus MFE | -10.92 |
| Energy contribution | -12.00 |
| Covariance contribution | 1.08 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.64 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.83 |
| SVM RNA-class probability | 0.830199 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 553467 101 - 23011544 UAAAAGCUUUCGGUGCUGAAACAUACAUAUGUAUAUGUAUGUAGGUAUAUGACUUGGAUGUGAGUUCAAGUGACCGACGUCACAUCAAAGCAAAUAUAAAC .....(((((.((((.(((.(((((((((....))))))))).(((.....((((((((....)))))))).)))....)))))))))))).......... ( -29.70, z-score = -3.50, R) >droSim1.chr2L 561154 91 - 22036055 UAAAAGCUUUCGGUGCGGAA----ACAUA--CAUAUGUAUGUAGGUACAUUCUUU----GUGGGUUCAAGUGACCGACGUCACAUCAAAGCAAAUAUAAAC .....(((((.(((..(((.----.((((--...((((((....))))))....)----)))..)))..(((((....))))))))))))).......... ( -22.20, z-score = -2.11, R) >droSec1.super_14 536099 93 - 2068291 UAAAAGCUUUCGGUGCGGAAACAUACAUA--CAUAUGUAUGUAGGUACAUUCCUU------GGGUUCAAGUGACCGACGUCACAUCAAAGCAAAUAUAAAC .....(((((.(((..(((..((((((((--(....)))))))((......)).)------)..)))..(((((....))))))))))))).......... ( -23.90, z-score = -2.81, R) >droYak2.chr2L 541651 91 - 22324452 UAAAAGCUUUCGGUUGGAAAA----------CAAACGUAUAUAUGUACAUGCCAUGGGUAUGGGCUGAAGUGACCGACGUCACAUCAAAGCAAAUAUAAAC .....((((((((((......----------...((((....)))).((((((...)))))))))))).(((((....)))))....)))).......... ( -21.60, z-score = -1.83, R) >droEre2.scaffold_4929 608750 87 - 26641161 UAAAAGCUUUCCGCUCGAAAA----------CAUACGUAUGUACGUA----CCAUGUGUAUGGGUUCAAGUGACCGACGUCACAUCAAAGCAAAUAUAAAC .....(((((......(((..----------((((((((((......----.))))))))))..)))..(((((....)))))...))))).......... ( -23.10, z-score = -2.97, R) >consensus UAAAAGCUUUCGGUGCGGAAA___ACAUA__CAUAUGUAUGUAGGUACAUGCCUUG__UAUGGGUUCAAGUGACCGACGUCACAUCAAAGCAAAUAUAAAC .....(((((.(((....................((((((....))))))...................(((((....))))))))))))).......... (-10.92 = -12.00 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:06:09 2011