| Sequence ID | dm3.chr3L |
|---|---|
| Location | 12,917,951 – 12,918,043 |
| Length | 92 |
| Max. P | 0.625171 |
| Location | 12,917,951 – 12,918,043 |
|---|---|
| Length | 92 |
| Sequences | 12 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 77.15 |
| Shannon entropy | 0.45651 |
| G+C content | 0.40396 |
| Mean single sequence MFE | -22.45 |
| Consensus MFE | -14.35 |
| Energy contribution | -14.67 |
| Covariance contribution | 0.32 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.08 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.625171 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr3L 12917951 92 - 24543557 -------UUCUAAUUUGCCAUUGCCAGCACUCAGGCAUUCAAGCAAAUUGUAAUACAAUUAGCGUCAUUAACAUGGCAUUUUGCAACGCAGCAACCAGC------------ -------........((((((((((........)))).....((.(((((.....))))).)).........))))))..((((......)))).....------------ ( -20.80, z-score = -1.32, R) >droSim1.chr3L 12297404 92 - 22553184 -------UUCUAAUUUGCCAUUGCCAGCACUCAGGCAUUCAAGCAAAUUGUAAUACAAUUAGCGUCAUUAACAUGGCAUUUUGCAACGCAGCAACUAGC------------ -------........((((((((((........)))).....((.(((((.....))))).)).........))))))..((((......)))).....------------ ( -20.80, z-score = -1.23, R) >droSec1.super_0 5093281 92 - 21120651 -------UUCUAAUUUGCCAUUGCCAGCACUCAGGCAUUCAAGCAAAUUGUAAUACAAUUAGCGUCAUUAACAUGGCAUUUUGCAACGCAGCAACCCAU------------ -------........((((((((((........)))).....((.(((((.....))))).)).........))))))..((((......)))).....------------ ( -20.80, z-score = -1.73, R) >droYak2.chr3L 12997730 92 - 24197627 -------UUCUAAUUUGCCAUUGCCAGCACUCAGGCAUUCAAGCAAAUUGUAAUACAAUUAGCGUCAUUAACAUGGCAUUUUGCAACGCUGCAACCAGC------------ -------...(((..((((((((((........)))).....((.(((((.....))))).)).........))))))..)))....((((....))))------------ ( -22.20, z-score = -1.45, R) >droEre2.scaffold_4784 12927503 92 - 25762168 -------UUCUAAUUUGCCAUUGCCAGCACUCAGGCAUUCAAGCAAAUUGUAAUACAAUUAGCGUCAUUAACAUGGCAUUUUGCAACGCUGCAACCAGC------------ -------...(((..((((((((((........)))).....((.(((((.....))))).)).........))))))..)))....((((....))))------------ ( -22.20, z-score = -1.45, R) >droGri2.scaffold_15110 20941262 101 - 24565398 -------UUGUGAUUUGCCAUUACCCGCUCUUAGGCAUUCAAGCAAAUUGUAAUACAAUUAGCGUCAUUUGCAU-UUGCUGUGCGGUUUGCUCGCUUACCCAAAGUGUC-- -------...(((..((((..............)))).)))(((((((((((...(((...(((.....)))..-)))...)))))))))))(((((.....)))))..-- ( -23.74, z-score = -0.65, R) >droVir3.scaffold_13049 2632758 92 + 25233164 -------UUGUGAUUUGCCAUUGCCCGCUUUUAGGCAUUCAAGCAAAUUGUAAUACAAUUAGCGUCAUUUACAUGGUAUGCUGAAUUGUUGCAUGCGUA------------ -------(((..((((((...((((........)))).....))))))..))).(((((((((((.(((.....))))))))).)))))..........------------ ( -21.30, z-score = 0.17, R) >droMoj3.scaffold_6680 7544045 92 + 24764193 -------UUGUGAUUUGCCAUUGCCCGCUUUUAGGCAUUCAAGCAAAUUGUAAUACAAUUAGCGUCAUUUACAUGGAAUGCUGAAUGGUUGCAUGUGUA------------ -------....(((((((...((((........)))).....)))))))(((((.((.((((((((((....)))..))))))).))))))).......------------ ( -21.60, z-score = 0.16, R) >droPer1.super_9 2580272 99 - 3637205 UUCUAAUUUGCCAUUUGCCAUUGCUUGCAUUUACGCAUUCAAGCAAAUUGUAAUACAAUUAGCGUCAUUUACAUGGCAUUUUGCAUGCCAGCCAACUGC------------ ........(((.(..((((((((..(((......)))..)))((.(((((.....))))).))..........)))))..).)))...(((....))).------------ ( -21.10, z-score = -0.38, R) >dp4.chrXR_group6 4291743 99 - 13314419 UUCUAAUUUGCCAUUUGCCAUUGCUUGCAUUUACGCAUUCAAGCAAAUUGUAAUACAAUUAGCGUCAUUUACAUGGCAUUUUGCAUGCCAGCCAACUGC------------ ........(((.(..((((((((..(((......)))..)))((.(((((.....))))).))..........)))))..).)))...(((....))).------------ ( -21.10, z-score = -0.38, R) >droAna3.scaffold_13337 6462495 104 + 23293914 -------UCCUAAUUUUCCAUUGCCUGCUCUCGGGCGUUGAAGCAAAUUGUAAUACAAUUAGCGUCAUUUACAUGGCAUUUUGCAACGCAGUCAGGACUCCCUCCUCCUGC -------...............(((((....)))))((((..((.(((((.....))))).))(((((....)))))......))))((((..((((.....)))).)))) ( -27.50, z-score = -2.27, R) >droWil1.scaffold_180698 6047994 85 + 11422946 -------UUGCAAUUUGCCAUUGCCUGCUUUUAGGCAUUCAAGCAAAUUGUAAUACAAUUAGCGUCAUUUACAUGGCAUUUUGCCUGCUUGC------------------- -------..((((..((((((((((((....)))))).....((.(((((.....))))).)).........))))))..))))........------------------- ( -26.20, z-score = -2.47, R) >consensus _______UUCUAAUUUGCCAUUGCCAGCACUCAGGCAUUCAAGCAAAUUGUAAUACAAUUAGCGUCAUUUACAUGGCAUUUUGCAACGCAGCAACCAGC____________ ...............((((((((((........)))).....((.(((((.....))))).)).........))))))................................. (-14.35 = -14.67 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:22:16 2011