| Sequence ID | dm3.chr3L |
|---|---|
| Location | 12,917,270 – 12,917,344 |
| Length | 74 |
| Max. P | 0.930979 |
| Location | 12,917,270 – 12,917,344 |
|---|---|
| Length | 74 |
| Sequences | 5 |
| Columns | 77 |
| Reading direction | reverse |
| Mean pairwise identity | 61.93 |
| Shannon entropy | 0.65713 |
| G+C content | 0.58963 |
| Mean single sequence MFE | -25.50 |
| Consensus MFE | -13.86 |
| Energy contribution | -11.70 |
| Covariance contribution | -2.16 |
| Combinations/Pair | 1.86 |
| Mean z-score | -1.02 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.36 |
| SVM RNA-class probability | 0.930979 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 12917270 74 - 24543557 -CCGAGUCGAGGCGGUACAAACCUCCAUCCGUA-AAAGCCAGGGGGAAAUCCGUGGCCUACGUGGGAACCCCUUUC- -.......((((.(((.......(((...((((-...((((.(((....))).)))).))))..))))))))))..- ( -22.91, z-score = 0.16, R) >droPer1.super_1972 4203 74 - 5480 CCGAAAAAGGGGAGGUAU-AUCCCCCAUCGACC-AGAAGCCAAGGGAAACCUGUGGCCAGCGCGGGAUCCCCUAUC- .......((((((((...-..))(((.((....-.)).(((((((....))).))))......))).))))))...- ( -28.20, z-score = -1.83, R) >dp4.Unknown_group_286 3567 70 + 32412 -CCGAAAAGGGGCGGUAU-AUCCCUCACCGACC-AGAAGCCAAGGGAAACCUGUGGCCAGCGCGGGAUCCCCU---- -......(((((((((..-.......)))).((-.(..(((((((....))).))))...)..))...)))))---- ( -25.20, z-score = -0.61, R) >droWil1.scaffold_181145 2512473 71 - 2682060 -CCGAGUUGGAGCGGCAU-AACUCCCAGCGUU---GUGGCAAGAGGAAAUUCUUGUCCUGCGAGGGAAAUUGCCUG- -............((((.-...((((..(((.---(.((((((((....))))))))).))).))))...))))..- ( -24.50, z-score = -1.50, R) >droVir3.scaffold_12734 11496 74 - 510240 -CCGAUUCGGAGCGCUAU-AGCUCCCAGCGGUCAAAAGCCUGAGGGAAACUUCUGGCCACCGAGGG-ACUUCCAUGU -((.....(((((.....-.)))))...((((.....(((.((((....)))).))).)))).)).-.......... ( -26.70, z-score = -1.30, R) >consensus _CCGAAUAGGGGCGGUAU_AACCCCCAGCGAUC_AGAGGCAAAGGGAAACCUGUGGCCAGCGAGGGAACCCCUAUC_ ........((((.........)))).................((((...((((((.....))))))...)))).... (-13.86 = -11.70 + -2.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:22:15 2011