| Sequence ID | dm3.chr3L |
|---|---|
| Location | 12,838,696 – 12,838,801 |
| Length | 105 |
| Max. P | 0.707037 |
| Location | 12,838,696 – 12,838,801 |
|---|---|
| Length | 105 |
| Sequences | 12 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 70.99 |
| Shannon entropy | 0.59807 |
| G+C content | 0.45685 |
| Mean single sequence MFE | -24.26 |
| Consensus MFE | -11.69 |
| Energy contribution | -11.55 |
| Covariance contribution | -0.14 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.10 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.707037 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 12838696 105 + 24543557 AUAAUCACUGCGCUCCAGCGUCAUCUCGUGACGAAUGGCCUCCAGUUGACAGCGUAGAGAGUCGUUCUCGUCCUG---AUCCAAUUUAAAAUCUUUAUUU--UAUUUCAA--------- ...(((((((((((.(((((((((...)))))...(((...)))))))..))))))).(((.....)))....))---))....................--........--------- ( -22.10, z-score = -1.05, R) >droSim1.chr3L 12225372 104 + 22553184 AUAAUCACUGCGCUCCAGGGUCAUCUCAUGUCGAAUGGCCUCCAGUUGACAGCGUAGAGAGUCGUUCUCGUCCUG---AUCCAAUU-AAAAUCAUUAUUU--UAUUUCAA--------- ...((((((((((....(((....))).((((((.(((...))).)))))))))))).(((.....)))....))---))......-.............--........--------- ( -22.50, z-score = -1.22, R) >droSec1.super_0 5022827 104 + 21120651 AUAAUCACUGCGCUCCAGGGUCAUCUCAUGUCGAAUGGCCUCCACUUGACAGCGUAGAGAGUCGUUCUCGUCCUG---AUCCAAUU-AAAAUCAUUAUUU--UAUUUCAG--------- .......((((((....(((....))).((((((.(((...))).)))))))))))).(((.....)))...(((---(......(-(((((....))))--))..))))--------- ( -23.60, z-score = -1.71, R) >droYak2.chr3L 12914359 104 + 24197627 GUAAUCACUGCGCUCCAGCGUCAUCUCAUGUCGAAUGGCCUCCAGUUGACAGCGCAGGGAGUCGUUCUCAUCCUG----AUAAAGUUAAACGAAUCAUUA--UGUUUUAA--------- .........(((((((.((((.......((((((.(((...))).))))))))))..)))).)))...(((..((----((...(.....)..))))..)--))......--------- ( -22.31, z-score = -0.16, R) >droEre2.scaffold_4784 12851183 104 + 25762168 GUAAUCACUGCGCUCCAGCGUCAUCUCAUGCCGAAUGGCCUCCAGUUGACAGCGCAGAGAGUCGUUCUCAUCCUG----AUGAAGUUAAAGGAAUCAUUA--UAUUUUGG--------- .......(((((((.....((((.((...(((....)))....)).))))))))))).(((.....))).((((.----..........)))).......--........--------- ( -24.70, z-score = -0.12, R) >droAna3.scaffold_13337 3544602 108 - 23293914 GUAGUCACUGCGCUCCACCGUCAUGUCAUGGCGCAUGGCUUCCAGUUGGCAACGCAGAGAGUCAUUCUCGUCCUAGAGAAUUAAGUUAAAGUAUUAAAUA--UAGUUCAA--------- (.(.((.(((((..(((.(.....((((((...)))))).....).)))...))))).)).))((((((......))))))...................--........--------- ( -23.20, z-score = -0.35, R) >dp4.chrXR_group6 1685440 83 - 13314419 AUAAUCGCUGCGCUCCAGCGACAUCUCAUGGCGAAUGGCCUCCAGUUGGCAGCGCAGCGAGUCGUUCUCGUCCUA-------AAA--CAAAA--------------------------- ....(((((((((((((((((....))..(((.....)))....))))).))))))))))...............-------...--.....--------------------------- ( -31.60, z-score = -3.28, R) >droPer1.super_20 318313 83 - 1872136 AUAAUCGCUGCGCUCCAGCGACAUCUCAUGGCGAAUGGCCUCCAGUUGGCAGCGCAGCGAGUCGUUCUCGUCCUA-------AAA--CAAAA--------------------------- ....(((((((((((((((((....))..(((.....)))....))))).))))))))))...............-------...--.....--------------------------- ( -31.60, z-score = -3.28, R) >droWil1.scaffold_180698 5959961 117 - 11422946 AUAAUCGCUGCGCUCCAAGGACAUCUCAUGCCGUAUGGCCUCCAGUUGACAGCGCAGUGAAUCAUUCUCAUCCUG--GGUUUGAAUCAAACGAAUCUCUAGUUAAUUGAUAUGUCUAAU ....((((((((((.((((((........(((....))).)))..)))..)))))))))).(((..(((.....)--))..)))(((((...(((.....)))..)))))......... ( -27.10, z-score = -0.53, R) >droVir3.scaffold_13049 2549357 102 - 25233164 ACAAUCGCUGCGCUCCACUGACAUCUCAUUGCGUAUGGCCUCCAACUGACAGCGCAGCGAGUCGUUCUCAUCCUA-------AAA--AGGGGAGUUAAUAAUUGACUAAAC-------- ....((((((((((.((.(((....))).)).((.(((...)))))....))))))))))((((..(((.((((.-------...--)))))))........)))).....-------- ( -27.50, z-score = -1.75, R) >droMoj3.scaffold_6680 7461099 102 - 24764193 ACAGUCACUGCGCUCCACUGACAUCUCAUUACGAAUGGCCUCUAAUUGACAACGUAGUGAGUCAUUCUCAUCCUA-------AAA--UAGAAGUUAAAUAAUCAGUAAUAU-------- ...((((.((.....)).)))).....(((((((((((((.(((..........))).).))))))).....(((-------...--)))..............)))))..-------- ( -15.00, z-score = -0.00, R) >droGri2.scaffold_15110 20848594 105 + 24565398 GCAAUCGCUGCGCUCCACAGACAUCUCAUUGCGCAUGGCCUCCAAUUGACAGCGUAGCGAGUCAUUUUCGUCCUA-------AAAACCAAAAAAUCAGGAGUUGAAUUAAAG------- ....(((((((((((((..(.((......)))...)))............))))))))))......((((((((.-------..............))))..))))......------- ( -19.96, z-score = 0.19, R) >consensus AUAAUCACUGCGCUCCAGCGACAUCUCAUGGCGAAUGGCCUCCAGUUGACAGCGCAGAGAGUCGUUCUCGUCCUA_______AAAU_AAAAAAAUCAUUA__UAUUUCAA_________ .......(((((((...........((((.....))))............))))))).(((.....))).................................................. (-11.69 = -11.55 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:22:12 2011