| Sequence ID | dm3.chr3L |
|---|---|
| Location | 12,830,198 – 12,830,351 |
| Length | 153 |
| Max. P | 0.550498 |
| Location | 12,830,198 – 12,830,351 |
|---|---|
| Length | 153 |
| Sequences | 5 |
| Columns | 168 |
| Reading direction | reverse |
| Mean pairwise identity | 63.79 |
| Shannon entropy | 0.63571 |
| G+C content | 0.34931 |
| Mean single sequence MFE | -33.49 |
| Consensus MFE | -15.81 |
| Energy contribution | -16.21 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.41 |
| Mean z-score | -0.81 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.550498 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 12830198 153 - 24543557 UAUUCAAAGUUAUUACAUUAGUUUAAAUAGACUGCAAAUGGAAGGGAAUUUCAAGUAUUGUUGAUUUCAACAGAGUUCAAAGAUUGAUCGCGCGUAUCUCGAAG---------UGUUAAUCGCAAAAACUGAUAGCGACGAUCUUGAAGAAUUCAACGCAGU------ ..............................(((((...(((((.....))))).((..(((((....)))))((((((.(((((((.((((...((((......---------(((.....)))......)))))))))))))))...)))))).)))))))------ ( -35.00, z-score = -1.11, R) >droAna3.scaffold_13337 3537522 125 + 23293914 ----------------------------AAUAUUUCUAUAGGGUGUAGUUCUACAAG----UGUUUCUAUAAAAAGGCAGAGAUUGUUUUUGCAAAGUUCGGGG---------UGGUUAUCAAA-AAGUUGAUAACAACGAUCUAUG-GAGAUGAUCUUGUUUGUGUU ----------------------------..((((((((((((.(((((....((...----.))..))))).....(((((((...))))))).....(((...---------..((((((((.-...))))))))..)))))))))-)))))).............. ( -28.10, z-score = -1.69, R) >droYak2.chr3L 12905717 159 - 24197627 UAUUGCAAUUAUGUCGUGC-UUGAAAAAAAACUCGGAAUGAAA-GGAAUUUCAAGUGGUGUUGAUUUUAAUACAGUUCAAAGAUUGAUCGCGUGAAUUUCAAAGAGUUCGAUUCGUUAAUCGCA-AAACUGAUAGCGACGAUCUGUACGAACUCAACGCAGU------ .(((((.......((((((-(((((.....(((.(((((....-...))))).))).((((((....))))))..)))))((((((.((((..((((((....))))))((((....))))...-.........)))))))))))))))).......)))))------ ( -37.74, z-score = -0.42, R) >droSec1.super_0 5014472 153 - 21120651 UAUAGCCAGUAAGUUGUGCUUUUUAAAUAGACUGCAAAUGAAAGGGAAUUUCAAGUAUUGUUGAUUUCAAUAGAAUUCAAAGAUUGAUCGCGGUAAAUUUGAAG---------UGUUAAUCGCAGAAACUGAUAGCGACGAUCUUGAAGAAUUCAACGCAGU------ ...((((((....))).)))..........(((((...(((((.....))))).((..(((((....)))))((((((.(((((((.((((.((...((((..(---------(....))..)))).....)).)))))))))))...)))))).)))))))------ ( -34.90, z-score = -1.18, R) >droSim1.chr3L 12216937 153 - 22553184 UAUAGCCAUUAGUUCGUGCUUUUUAAAUAGACUGCAAAUGAAAGGGAAUUUCAAGUAUUGCUGAUUUCAAUAGAGUUCAAAGAUUGAACGCGGUAAUUUCGAAG---------UGUUAAUCGCAGAAACUGAUAGCGACGAUCUUGAAGAAUUCAACGCAGU------ ...((((........).)))..........(((((...(((((((.(((.......))).))..)))))...((((((.(((((((..(((..((.((((...(---------((.....))).)))).))...))).)))))))...))))))...)))))------ ( -31.70, z-score = 0.35, R) >consensus UAUAGCAAGUAAGUCGUGC_UUUUAAAUAGACUGCAAAUGAAAGGGAAUUUCAAGUAUUGUUGAUUUCAAUAGAGUUCAAAGAUUGAUCGCGCGAAUUUCGAAG_________UGUUAAUCGCA_AAACUGAUAGCGACGAUCUUGAAGAAUUCAACGCAGU______ ..............................(((((...(((((.....)))))...................((((((.(((((((.((((...........................................)))))))))))...))))))...)))))...... (-15.81 = -16.21 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:22:11 2011