| Sequence ID | dm3.chr3L |
|---|---|
| Location | 12,829,025 – 12,829,140 |
| Length | 115 |
| Max. P | 0.912896 |
| Location | 12,829,025 – 12,829,140 |
|---|---|
| Length | 115 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 74.51 |
| Shannon entropy | 0.48900 |
| G+C content | 0.31879 |
| Mean single sequence MFE | -23.25 |
| Consensus MFE | -14.48 |
| Energy contribution | -14.02 |
| Covariance contribution | -0.46 |
| Combinations/Pair | 1.46 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.23 |
| SVM RNA-class probability | 0.912896 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 12829025 115 - 24543557 UCAAAUAUUUAUGGGUUAAGGUGUUCAAACGCUUAUCAGGGCAGCGUUAAGAGCCAUUUGAAUACA-UUUAUUGAAUGGAAAGCCUAUAAAGUUGAUUUAAUUAUUAUUCAGAAGG ((((...((((((((((...(((((((((.((((....)))).((.......))..))))))))).-(((((...))))).)))))))))).)))).................... ( -24.30, z-score = -1.53, R) >droSim1.chr3L 12215790 115 - 22553184 UCAAAUAUUUAUGGGUUAAGGUGUUCAAACGCUUAUCAGGGUAGCGUUAAGAGCCAUUUGAAUACA-UUUAUUGAAUGGAAAGCCUAUAAAGUUGAUUUAAUUAUUAUUCAGAAGG ((((...((((((((((..........((((((.((....)))))))).....(((((..(.....-....)..)))))..)))))))))).)))).................... ( -25.20, z-score = -1.99, R) >droSec1.super_0 5013473 115 - 21120651 UCAAAUAUUUAUGGGCUAAGGUGUUCAAACGCUUAUCAGGGUAGCGUUAAGAGCCAUUUGAAUACA-UUUAUUGAAUGGAAAGCCUAUAAAGUUGAUUUAAUUAUUAUUCAGAAGG ((((...((((((((((..........((((((.((....)))))))).....(((((..(.....-....)..)))))..)))))))))).)))).................... ( -27.60, z-score = -2.49, R) >droYak2.chr3L 12904520 115 - 24197627 UCAUUUAUUUAUGGGUUAAGGUGUUCCAACGCUUAUCAGGAUAGCGUCGAGAGCCAUUUAAAUAUA-UUUAUUGGAUAAAAGACCUAUAAAGUUUAUUUAAUUAUUAUUCAGAAGG .......((((((((((..(((.(((..(((((.........))))).))).)))((((((.((..-..))))))))....))))))))))......................... ( -20.50, z-score = -0.76, R) >droEre2.scaffold_4784 12841460 109 - 25762168 UCAAAUAUUUGUGGGUUAAGGUGUUCAAACGCUUAUCAGCGUAGCGUUAAGAGCCAUUUAAAUACA-UUUGUUGGAU-GAAAGCCUAUAAAGUUG-----AUUAUUAUUCAGAAGG ((((...((((((((((..(((.....((((((.........))))))....))).........((-((.....)))-)..)))))))))).)))-----)............... ( -24.20, z-score = -1.60, R) >droMoj3.scaffold_6680 7452885 109 + 24764193 UUGCCUACUCUUGAUUUCG---UUUCCAUUGCCUACAAAUAUUUAAUCAUGAGAAAAAUCAACAAACCUUGACGUUUUAUGGACAUAUUGAUCUA----UGAUAUGAUCUAGGUGU .......(((.(((((..(---(.....(((....)))..))..))))).)))............((((.(((((.((((((((.....).))))----))).))).)).)))).. ( -17.70, z-score = -0.42, R) >consensus UCAAAUAUUUAUGGGUUAAGGUGUUCAAACGCUUAUCAGGGUAGCGUUAAGAGCCAUUUGAAUACA_UUUAUUGAAUGGAAAGCCUAUAAAGUUGAUUUAAUUAUUAUUCAGAAGG .......((((((((((.....((((..(((((.........)))))...))))(((((.((((.....)))))))))...))))))))))......................... (-14.48 = -14.02 + -0.46)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:22:10 2011