| Sequence ID | dm3.chr3L |
|---|---|
| Location | 12,827,648 – 12,827,738 |
| Length | 90 |
| Max. P | 0.683153 |
| Location | 12,827,648 – 12,827,738 |
|---|---|
| Length | 90 |
| Sequences | 11 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 63.82 |
| Shannon entropy | 0.73984 |
| G+C content | 0.48342 |
| Mean single sequence MFE | -23.96 |
| Consensus MFE | -7.34 |
| Energy contribution | -7.35 |
| Covariance contribution | 0.01 |
| Combinations/Pair | 1.45 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.31 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.683153 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 12827648 90 - 24543557 UUUGGGGCUUGGCUU---UCGUGACGUCACACG------GCGCACGCCUCUCUAAACAGCGAUACAUAUAUAUAUCUAUCAG----AUACAUCAACGCGAAUG- (((((((...(((..---..(((.((((....)------))))))))).)))))))..((((((.(((....))).)))).(----(....))...)).....- ( -19.70, z-score = -0.89, R) >droSim1.chr3L 12214318 94 - 22553184 UUUGGGGCUUGGCUU---CCGUGACGUCACACG------GCGUACGCCCCUCUAAACAGCGAUACAUAUACAUAUGUAUCUGUCAGAUACAUCAACACGAAUG- ...(((((...((..---(((((......))))------).))..)))))(((..(((..((((((((....))))))))))).)))................- ( -26.70, z-score = -2.10, R) >droSec1.super_0 5012030 92 - 21120651 UUUGGGGCUUGGCUU---CCGUGACGUCACACG------GCGCACGCCCCUCUAAACAGCGAU--AUAUAUAUAUGUAUCUGUCAGAUACAUCAACACGAAUG- ...(((((...((..---(((((......))))------).))..))))).............--........(((((((.....)))))))...........- ( -26.30, z-score = -2.03, R) >droYak2.chr3L 12903057 86 - 24197627 UUUGGGGCUUGGCUU---CCGUGACGUCACGCG------GCGCACGCCCCUCUAAAAAGCG--------AUAUAUCUAACAGAUACAUACAUCAACACGAAUG- ...(((((.(((((.---.((((....)))).)------)).)).)))))...........--------...((((.....))))..................- ( -22.20, z-score = -1.51, R) >droEre2.scaffold_4784 12840057 82 - 25762168 UUUGGGGCCUGGCUU---CCGUGACGUCACACG------GCGCACGCCCCUCUGCAAAGCG--------AUAUAUCUAACAG----AUACAUCAAGACGAAUG- ...(((((...((..---(((((......))))------).))..)))))..........(--------((.((((.....)----))).)))..........- ( -24.90, z-score = -1.91, R) >droAna3.scaffold_13337 3535504 81 + 23293914 --UGGGGCUUGGCUUGGCCUGUGACGUCACACG------GCGCACGCCCCUCUAAACGC---------UCUGUAUCCACCAG----AUACA--GAUACGAAUGU --.(((((..(((...))).(((.((((....)------)))))))))))......((.---------((((((((.....)----)))))--))..))..... ( -31.20, z-score = -2.79, R) >dp4.chrXR_group6 1674864 90 + 13314419 --UGGGGCUUGGCUU---CUGUGACGUCACACGCGCAGCGCACACGCCCCUCUAAAUGCCCCUGACUAUCUGUAUCUGUCAG----AUACA--G--ACCGCUG- --.(((((.((((..---(((((.((.....))))))).)).)).)))))..................((((((((.....)----)))))--)--)......- ( -32.60, z-score = -2.79, R) >droWil1.scaffold_180698 5942982 90 + 11422946 UUUGGGGCUUGGCUU---CUGUGACGUCAC---------GCGCACGCCUCGAAAUGUAUUAGAUACACUUUCUGUCUAAGUG-UGUUUGUAGGUAUGCUAAUG- ((((((((.((((..---..(((....)))---------)).)).))))))))((.(((.((((((((((.......)))))-)))))))).)).........- ( -26.20, z-score = -1.59, R) >droVir3.scaffold_13049 2539059 86 + 25233164 UUUGGGGCUUGGCUC---UCGUGACGUCACAC-------GCGCACAACUUACUCAA-AUAUGUACAGCUAUGUAAAUAUA-----UCUGUG-CGAUACAGUUG- ((((((..(((((..---.((((......)))-------).)).)))....)))))-)..(((((((.((((....))))-----.)))))-)).........- ( -19.50, z-score = -0.30, R) >droMoj3.scaffold_6680 7451786 87 + 24764193 UUUGGGGCUUGGCUC---UCGUGACGU--CAC-------GCGCACAUCUAACUCAACAGACGUAUAAAUAUGUAAAUAUAA---CUGUAAU-AUAUACAGUUG- .(((((...((((..---.((((....--)))-------).)).)).....)))))...(((((....))))).....(((---(((((..-...))))))))- ( -18.00, z-score = -1.01, R) >droGri2.scaffold_15110 20838625 85 - 24565398 UUUGGGGCUUGGCUA---UUGUGACGU--CAC-------GCGCACAACUAACCCAA-AUAGGUGUAAAAAUGUAACAAGUA----UGUGUG-AGAUACAAUCG- ((((((...(((...---(((((.((.--...-------.)))))))))).)))))-)...((((....(((((.....))----)))...-..)))).....- ( -16.30, z-score = 0.82, R) >consensus UUUGGGGCUUGGCUU___CCGUGACGUCACACG______GCGCACGCCCCUCUAAACAGCGGU__AUAUAUAUAUCUAUCAG____AUACA_CAAUACGAAUG_ ...((((..((((.......(((......))).......)).))..))))...................................................... ( -7.34 = -7.35 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:22:09 2011