| Sequence ID | dm3.chr2L |
|---|---|
| Location | 5,071,389 – 5,071,567 |
| Length | 178 |
| Max. P | 0.996821 |
| Location | 5,071,389 – 5,071,567 |
|---|---|
| Length | 178 |
| Sequences | 5 |
| Columns | 183 |
| Reading direction | forward |
| Mean pairwise identity | 70.24 |
| Shannon entropy | 0.50543 |
| G+C content | 0.42655 |
| Mean single sequence MFE | -50.12 |
| Consensus MFE | -26.69 |
| Energy contribution | -26.29 |
| Covariance contribution | -0.40 |
| Combinations/Pair | 1.39 |
| Mean z-score | -2.73 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.99 |
| SVM RNA-class probability | 0.996821 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 5071389 178 + 23011544 AGGGUGGCCCAAAAAAGGGAGCGCCAAAUGGUGACAAAUCGUUGGCGGAAUGUUAUCAGUGGACAUUUCUAAAGCAACUCCAUGCACC-CAUUCAACAAGUGGAAUCUUGAAUUAUUGGCCUAAAGUCACCUAGAAAUGUCCAUUUAUAGAAUUCUCUUCGAAUAGAAGCAUUACCCAA---- .(((((((((......)))..((((((.((((.....))))))))))((((.((((.((((((((((((((..(((......)))..(-((((.....))))).............((((.....))))..)))))))))))))).)))).)))).((((.....))))..))))))..---- ( -55.70, z-score = -3.39, R) >droEre2.scaffold_4929 5151217 148 + 26641161 AGGGUGGCCCAAAAAAUGGAACACCAAAUGGUGACGAAUCGUUGGAGGAACCUUAUCAAUGGAUAUUUCUAAAGCAAC----------------GCGGAUUAGGCUCGUGGAUUAGUAG---------------AAAUGUCCAUUUGUAAAAUUCCUUUCCAAUAGAGCCAUUGCCCAA---- .((((((((((.....)))..((((....)))).....((((((((((((..((((.((((((((((((((......(----------------((((.......)))))......)))---------------))))))))))).))))..))))..)))))).)))))...))))..---- ( -52.50, z-score = -4.35, R) >droYak2.chr2L 11870974 170 - 22324452 AGGGUGACCCAAAAUUGG-AGCGCCAACUGGUGGCGAAUCGUUGGUGGAACGUUAUCAAUGGACAUUUCUAAAGCAACGCCCUAGGCUGUGUCGAAUCAGUGUCGGCAAAGCCUCGUGGGU------------GAAAUGUUUCUUUGAUUAAUUCCUUUCCAAUAGAAGCACCAAACUACCAG ..((((..(((....)))-..))))..(((((((.(..(((((((.((((....(((((.(((((((((.........((((.(((((.((((((.......)))))).)))))...))))------------)))))))))..)))))...))))...))))).))..).)).....))))) ( -58.20, z-score = -2.80, R) >droSec1.super_5 3158232 149 + 5866729 AGGGUGGCCCAAAAAAGG-AGCGCCAAAUGGUGACGAAUCGUUGGAGGAACGUAAUCAGUGGGCAUUUCUAAAGCAAC---------C-CAUUCAACAAGUGGAAUCUUGAUUUAUUGGCCUA----------GAAAUGUCCAUUUAUAGAAUUUCCUAC---------CAUUACUCAA---- .(((((((((......))-...))).((((((((((...))))..(((((.......((((((((((((((..((...---------(-((((.....)))))(((....))).....)).))----------))))))))))))........)))))))---------))))))))..---- ( -39.66, z-score = -0.97, R) >droSim1.chr2L_random 295126 158 + 909653 AGGGUGGCCCAAAAAAGG-AGCGCCAAAUGGUGACGAAUCGUUGGAGGAACGUUAUCAGUGGACAUUUCUAAAGCAACUCCAUUCACC-CAUUCAACAAGUGGAAUCUUGAUUUAUUGGCCUA----------GAAAUGUCCAUUUAUAGAAUUUCCUAC---------CAUUACACAA---- ..((((..((......))-..)))).((((((((((...))))..(((((..((((.((((((((((((((..((........(((.(-((((.....))))).....))).......)).))----------)))))))))))).))))...)))))))---------))))......---- ( -44.56, z-score = -2.11, R) >consensus AGGGUGGCCCAAAAAAGG_AGCGCCAAAUGGUGACGAAUCGUUGGAGGAACGUUAUCAGUGGACAUUUCUAAAGCAAC_CC_U___CC_CAUUCAACAAGUGGAAUCUUGAAUUAUUGGCCUA__________GAAAUGUCCAUUUAUAGAAUUCCCUUC_AAUAGA__CAUUACACAA____ .(((((..((((.........((((....))))........)))).((((..((((.((((((((((((................................................................)))))))))))).))))..))))................)))))...... (-26.69 = -26.29 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:17:59 2011