| Sequence ID | dm3.chr3L |
|---|---|
| Location | 12,792,557 – 12,792,670 |
| Length | 113 |
| Max. P | 0.656524 |
| Location | 12,792,557 – 12,792,670 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 83.85 |
| Shannon entropy | 0.31108 |
| G+C content | 0.38144 |
| Mean single sequence MFE | -29.25 |
| Consensus MFE | -17.57 |
| Energy contribution | -19.38 |
| Covariance contribution | 1.81 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.656524 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 12792557 113 - 24543557 ACAAAAGUGCAGGAGC-CCUGUUAUCGGUCAGAAGCUGUAAGAAUCGCUUGAUUCAUUGCAGUUAACUGAUAU-AAAUAUAAAUGCAAAUUGUAUAAAUACAUCGGCGAGUGCAC ......(((((...((-(.((((((((((....(((((((((((((....))))).)))))))).))))))).-........((((.....))))....)))..)))...))))) ( -31.60, z-score = -2.79, R) >droSim1.chr3L 12179687 113 - 22553184 ACAAAAGUGCAGGAGC-CGUGUUAUCGGUCAGAAGCUGUAAGAAUCGCUUGAUUCAUUGCAGUUAACUGAUAU-AAAUAUAAAUGCAAAUUGUAUAAAUACAUCUGCAAGUGCAC ......(((((.....-.(((((....(((((.(((((((((((((....))))).))))))))..)))))..-.)))))...((((...((((....))))..))))..))))) ( -30.70, z-score = -2.57, R) >droSec1.super_0 4977442 113 - 21120651 ACAAAAGUGCAGGAGC-CGUGUUAUCGGUCAGAAGCUGUAAGAAUCGCUUGAUUCAUUGCAGUUAACUGAUAA-AAAUAUAAAUGCAAAUUGUAUAAAUACAUCUGCGAGUGCAC ......(((((.....-....((((((((....(((((((((((((....))))).)))))))).))))))))-.........((((...((((....))))..))))..))))) ( -30.20, z-score = -2.37, R) >droYak2.chr3L 12864066 113 - 24197627 ACAAAAGUGCAGGAGG-CUUGUUAUCGGUCAGAAGCUGUAAGAAUCGCUUGAUUCAUUGCAGUUAACUGAAAU-AAAUAAGAAUGCAAAUUGUAUAAAUACAUCUGCGAGUGCAC ......(((((.....-((((((.....((((.(((((((((((((....))))).))))))))..))))...-.))))))..((((...((((....))))..))))..))))) ( -30.80, z-score = -2.43, R) >droEre2.scaffold_4784 12800151 114 - 25762168 ACAAAAGUGCAGGAGC-CUUGUUAUCGGUCAGAAGCUGUAAGAAUCGCUUGAUUCACUGCACUUAACUGAUACAAAAAAAAAAUGCAAAUUGUAUAAAUACAUCUGCGAGUGCCC .((....((((((...-.((((.((((((...(((.((((.(((((....)))))..))))))).)))))))))).......((((.....)))).......))))))..))... ( -24.20, z-score = -0.84, R) >droAna3.scaffold_13337 3501079 113 + 23293914 --ACAGGCAGAAGUGCAUCUGUUAUCGGUCAGAAGCUGCAGGCUUCGCUUGAUUUACGGCUAUUGGCAGUAAUAUAAAAGAGAUUCUUCAUUUAAAAAUACACUCGCCAAUGCAC --.(((((.((((((((((((........))))...)))..)))))))))).......((.(((((((((....((((.(((....))).)))).......))).)))))))).. ( -28.00, z-score = -0.96, R) >consensus ACAAAAGUGCAGGAGC_CCUGUUAUCGGUCAGAAGCUGUAAGAAUCGCUUGAUUCAUUGCAGUUAACUGAUAU_AAAUAUAAAUGCAAAUUGUAUAAAUACAUCUGCGAGUGCAC ......((((............(((((((....(((((((((((((....))))).)))))))).)))))))...........((((...((((....))))..)))).)))).. (-17.57 = -19.38 + 1.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:22:06 2011