| Sequence ID | dm3.chr3L |
|---|---|
| Location | 12,785,404 – 12,785,509 |
| Length | 105 |
| Max. P | 0.891076 |
| Location | 12,785,404 – 12,785,509 |
|---|---|
| Length | 105 |
| Sequences | 5 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 65.32 |
| Shannon entropy | 0.64154 |
| G+C content | 0.32748 |
| Mean single sequence MFE | -16.83 |
| Consensus MFE | -10.40 |
| Energy contribution | -10.00 |
| Covariance contribution | -0.40 |
| Combinations/Pair | 1.22 |
| Mean z-score | -0.67 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.10 |
| SVM RNA-class probability | 0.891076 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 12785404 105 - 24543557 GGUUUAAAAAGGCCCAAAAAUCAAUAGAGAAAUGGGCUUAUGUGCACUGGGAAAAUUAUACUAGUACUAACAUGCAAAGAACGAUUAAAGAAUUUUAUCUUAGGU--------- .((((....(((((((....((....))....)))))))((((..(((((..........)))))....)))).....)))).....((((......))))....--------- ( -19.60, z-score = -1.27, R) >droEre2.scaffold_4784 12792986 112 - 25762168 GACUCGAAAAGGCCCGAAAAUCAAUAGGGAAAUGGGCUUAUAUGCACUGGAAAA-AUACAUCGAUACAAACUUGUGAAGAAGAGAAUGAUAAAAGUAAUAUAAAAAUUGAGGU- ..(((((....(((((....((....))....)))))((((((..(((......-.....((..((((....))))..)).............))).))))))...)))))..- ( -17.35, z-score = -1.19, R) >droYak2.chr3L 12856830 79 - 24197627 GGCUCGUAAAGGCCCGAAAAUCAAUAGGGAAAUGGGCUUAAGUGCACUGCAAAA-AUAAAUCAAUACAAACAUUUAAAGU---------------------------------- .((..(((.(((((((....((....))....)))))))...)))...))....-.........................---------------------------------- ( -12.90, z-score = -0.57, R) >droSec1.super_0 4970178 114 - 21120651 GGUUCGAAAAGGCCCAAAAAUCAAUAGGGAAAUGGGCUUAUGUGCACUGAAAAAUAUAUUCUACUACUGACAUACAAAAAAUGAUUGAAUAAUUAUGUAGUAUUUACUUAUAAU (((.((...(((((((....((....))....)))))))...)).))).............((((((((.....))....((((((....))))))))))))............ ( -16.50, z-score = -0.23, R) >droSim1.chr3L 12172458 107 - 22553184 GGUUCGAAAAGGCCCAAAAAUCAAUAGGGAAAUGGGCUUAUGUGCACUGAAAAAUAUAUUAUACUCCUGACAUUCAAAAAAUGAUUGAAGAAUUAUGUAUUUUAGGU------- (((.((...(((((((....((....))....)))))))...)).)))..(((((((((.((.((.(...((((.....))))...).)).)).)))))))))....------- ( -17.80, z-score = -0.08, R) >consensus GGUUCGAAAAGGCCCAAAAAUCAAUAGGGAAAUGGGCUUAUGUGCACUGAAAAA_AUAUACUAAUACUAACAUGCAAAGAAUGAUUGAAGAAUUAUAUAUUAUAU_________ .........(((((((....((....))....)))))))........................................................................... (-10.40 = -10.00 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:22:03 2011