| Sequence ID | dm3.chr3L |
|---|---|
| Location | 12,784,177 – 12,784,272 |
| Length | 95 |
| Max. P | 0.624902 |
| Location | 12,784,177 – 12,784,272 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 71.41 |
| Shannon entropy | 0.48710 |
| G+C content | 0.36933 |
| Mean single sequence MFE | -19.52 |
| Consensus MFE | -9.07 |
| Energy contribution | -10.43 |
| Covariance contribution | 1.36 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.624902 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 12784177 95 + 24543557 CAUUAAACUUAACAUGAGAGAGUUUGGAAGAGAGAGUGAGAGUAAAGAAAAAGAGAUAAUAUUUGCCGCUCUUCGAAGCUCUCACACACACACCU------------ ..............((.((((((((.((((((.(.(..((.((...............)).))..)).)))))).)))))))).)).........------------ ( -23.26, z-score = -2.62, R) >droWil1.scaffold_181096 65050 95 + 12416693 -GCUAACUGCAAUAUGCAAAAA---GAAAGAGA----AAGAGAAAACAAAAAGAGAGAAUAUUUGUAUUUUUUCUGUAUUAAAACACACA-ACAACAAAAACUU--- -......(((.....)))....---........----..............((((((((((....))))))))))...............-.............--- ( -9.20, z-score = -0.26, R) >droYak2.chr3L 12855596 104 + 24197627 CAUUAAACUUAACAUGAGAGAGUUGGGGAAAGA--GAGAGA-UAAAGGGAGAGAGAUAAUAUUGGUCGCUCUUUGGAGCUCUCUCACACACACAACACACACCUGUU .......((((((.(....).))))))....((--(((((.-(((((((.((..(((...)))..)).)))))))...)))))))...................... ( -25.50, z-score = -1.63, R) >droSec1.super_0 4968948 97 + 21120651 CAUUAAACUUAACAUGAGAGAGUUUGGAAAAGAGAGUGAGAGUAAAGAGAAAGAGAUAAUAUUUGCCGCUCUUUGAUGCUCUCACACACACACACCU---------- ..((((((((.........))))))))........((((((((((((((..(((.......)))....)))))...)))))))))............---------- ( -21.20, z-score = -1.99, R) >droSim1.chr3L 12171245 95 + 22553184 CAUUAAACUUAACAUGAGAGAGUUUGGAAGAGA--GUGAGAGUAAAGAAAAAGAGAUAAUAUUUGCCGCUCUUCGAAGCUCACACACACACACACCU---------- ...................((((((.((((((.--....(.(((((...............)))))).)))))).))))))................---------- ( -18.46, z-score = -1.70, R) >consensus CAUUAAACUUAACAUGAGAGAGUUUGGAAGAGA__GUGAGAGUAAAGAAAAAGAGAUAAUAUUUGCCGCUCUUCGAAGCUCUCACACACACACAACA__________ ..............((.((((((((.((((((.....((......................)).....)))))).)))))))).))..................... ( -9.07 = -10.43 + 1.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:22:03 2011