| Sequence ID | dm3.chr3L |
|---|---|
| Location | 12,769,814 – 12,769,934 |
| Length | 120 |
| Max. P | 0.781760 |
| Location | 12,769,814 – 12,769,934 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 80.72 |
| Shannon entropy | 0.33950 |
| G+C content | 0.41042 |
| Mean single sequence MFE | -34.97 |
| Consensus MFE | -19.32 |
| Energy contribution | -21.72 |
| Covariance contribution | 2.40 |
| Combinations/Pair | 1.16 |
| Mean z-score | -2.20 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.67 |
| SVM RNA-class probability | 0.781760 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 12769814 120 + 24543557 AUAUCGGGGACAUUGUUUUGUGGGCUGCUCCAUUUCGGUUGAUUGACUGCAAGUGGAGAUGCGUUCCCUAAAGCAAAUGUUCUUAUUUAAGGUACUACCUCCAAAUCUUUGAUUAGUCCC ......(((((.((((((((.(((...(((((((((((((....))))).)))))))).......))))))))))).............(((.....)))...............))))) ( -34.60, z-score = -1.90, R) >droSim1.chr3L 12156333 118 + 22553184 AUAUCGGGGACAUUGUUUUGUGGGCAGCUCCAUUUCGGUUGAUUGACUGUAAGUGGAGAUGCGAUCCCUAAAGCAAAUAUUCUUAUUUAAGGUACUAUCUCCGAAUCUUCGAUUAGGG-- ...(((((((..((((((((.(((((.(((((((((((((....))))).)))))))).)))...)).))))))))....((((....)))).....)))))))..............-- ( -36.50, z-score = -2.47, R) >droSec1.super_0 4954750 118 + 21120651 AUAUUGAGGACAUUGUUUUGUGGGCAGCUCCAUUUCGGUUGAUUGACUGUAAGUGGAGAUGCGAUCCCUAAAGCAAAUGUUCUUAUUUAAGGAAGACUCUUCGAGUCUUCUAUUAGGC-- ....((((((((((((((((.(((((.(((((((((((((....))))).)))))))).)))...)).)))))).)))))))))).....(((((((((...))))))))).......-- ( -46.30, z-score = -5.52, R) >droYak2.chr3L 12841105 118 + 24197627 GUAUUGUGGACAUUCAUUUGCAGGUAAUUGGUUUUCGGUUGAUUGACUGUAAGUGGAUACGCAUUCCCUAAAGCAAAUAUUCUUAUUCAAUGUUCUUUCUCCCAAUCUUUGAUUGGGC-- .......((((((((((((((((.(((((..(.....)..))))).))))))))))))..((..........)).................)))).....(((((((...))))))).-- ( -28.10, z-score = -1.28, R) >droEre2.scaffold_4784 12777403 118 + 25762168 AUACUGGGCACAUUCUUUUGUGGGAUAUUCUAUUUGGGUUGAUUGGCUGAAAGUGGAUAUGCGUUCCCUAAAGCAAAUGUUCCUAUUCGAGGUCCUACAGCCGAAUCUUUGAUUGGGC-- ..................((((((((.(((....((((.......(((...((.(((.......)))))..))).......))))...)))))))))))(((.((((...)))).)))-- ( -29.34, z-score = 0.16, R) >consensus AUAUUGGGGACAUUGUUUUGUGGGCAGCUCCAUUUCGGUUGAUUGACUGUAAGUGGAGAUGCGUUCCCUAAAGCAAAUGUUCUUAUUUAAGGUACUAUCUCCGAAUCUUUGAUUAGGC__ .....(((((((((((((((.(((...(((((((((((((....))))).)))))))).......))))))))).)))))))))................((.((((...)))).))... (-19.32 = -21.72 + 2.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:22:02 2011