| Sequence ID | dm3.chr3L |
|---|---|
| Location | 12,768,277 – 12,768,373 |
| Length | 96 |
| Max. P | 0.885285 |
| Location | 12,768,277 – 12,768,373 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 78.31 |
| Shannon entropy | 0.33692 |
| G+C content | 0.40667 |
| Mean single sequence MFE | -27.46 |
| Consensus MFE | -20.04 |
| Energy contribution | -20.08 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.07 |
| SVM RNA-class probability | 0.885285 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 12768277 96 - 24543557 ------------------------AUUCUUCUGUUGGCCAAAUGAACGGUGUAUUUGUUCUAGCUUCUUCGCCAUCUACUAGAACGAAUACAGCAGAGCAAUCUAUUGAAAGGAGAAAUA ------------------------.(((((((.(..(..........(.((((((((((((((...............)))))))))))))).)(((....))).)..).)))))))... ( -28.26, z-score = -3.05, R) >droSim1.chr3L 12152707 96 - 22553184 ------------------------AUUCUUCUGUUGGUCAGAUGAACGGUGUAUUUGUUCUAGCUUCUUCGCCAUCUACUAGAACGGAUACAGCAGAACAAUCCACUGAAAGGAGAAAUA ------------------------.(((((((.(..((..(((....(.((((((((((((((...............)))))))))))))).)......))).))..).)))))))... ( -28.36, z-score = -2.58, R) >droSec1.super_0 4953159 120 - 21120651 AUUCUUCUGUUGGUCAGAUGAACGGUUCUUCUGUUGGUCAGAUGAACGGUGUAUUUGUUCUAGCUUCUUCGCCAUCUACUAGAACGGAUACAGCAGAACAAUCCAUUGAAAGGAGAAAUA .((((((((((.(((.(((.(((((.....))))).))).))).)))(.((((((((((((((...............)))))))))))))).)................)))))))... ( -39.46, z-score = -3.22, R) >droYak2.chr3L 12839551 96 - 24197627 ------------------------AUUUUCCUGUUGGUCAGAUGAACGAUGUAUUUGUUCCAGCUUCUUCUCCACCUACAAGGACGAAUACCGCAGAGCAAUCCAUUGAAAGGAGAAGUA ------------------------........(((((.((((((.......))))))..)))))..(((((((.((.....))............((....))........))))))).. ( -21.60, z-score = -0.52, R) >droEre2.scaffold_4784 12775815 96 - 25762168 ------------------------AUUCUUAUUGUGGGCCGAUAAAUGGUGUAUUUGUUCUAGCUUCUUCUCUACCUACAAGGACGAAUGCCGUAGAGGAAUCUGCUGAAAGGAGAAAUA ------------------------.(((((...(((.((((.....)))).)))...(((.(((...((((((((...((........))..))))))))....))))))..)))))... ( -19.60, z-score = 0.49, R) >consensus ________________________AUUCUUCUGUUGGUCAGAUGAACGGUGUAUUUGUUCUAGCUUCUUCGCCAUCUACUAGAACGAAUACAGCAGAGCAAUCCAUUGAAAGGAGAAAUA .........................(((((((.((((..........(.((((((((((((((...............)))))))))))))).).((....))..)))).)))))))... (-20.04 = -20.08 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:22:01 2011