| Sequence ID | dm3.chr3L |
|---|---|
| Location | 12,767,581 – 12,767,675 |
| Length | 94 |
| Max. P | 0.818323 |
| Location | 12,767,581 – 12,767,675 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 77.73 |
| Shannon entropy | 0.43418 |
| G+C content | 0.46532 |
| Mean single sequence MFE | -27.30 |
| Consensus MFE | -21.12 |
| Energy contribution | -19.60 |
| Covariance contribution | -1.52 |
| Combinations/Pair | 1.62 |
| Mean z-score | -1.07 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.79 |
| SVM RNA-class probability | 0.818323 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 12767581 94 + 24543557 UCCACUGAUCCCGCGGAUCUAUAAGGUACCCUUCAUCGAAAGGAGUGACAUUUUGUGGAGCACUCACAGAGAUCUGCGGUUGUAGCAUAUGAUC ....(((...((((((((((....(.(((((((......)))).))).)...((((((.....))))))))))))))))...)))......... ( -27.50, z-score = -1.21, R) >droSim1.chr3L 12151981 94 + 22553184 UCCACUGAUCCCGCGGAUCUAUAAGGAAUCCCUCAUCGAAGGGAGUGAUAUUUUGUGGAGCACUCACAGAGAUCUGCGGUUGUAGCAUAUGAUC ....(((...((((((((((........(((((......)))))........((((((.....))))))))))))))))...)))......... ( -29.40, z-score = -1.28, R) >droSec1.super_0 4952454 94 + 21120651 UCCACUGAUCCCGCGGAUCUAUAAGGAAUCCCUCAUCGAAGGGAGUGAUAUUUUGUGGAGCACUCACAGAGAUCUGCGGUUGUAGCAUAUGAUC ....(((...((((((((((........(((((......)))))........((((((.....))))))))))))))))...)))......... ( -29.40, z-score = -1.28, R) >droYak2.chr3L 12838774 94 + 24197627 UCCACUGAUCCCGGGGAUCUAUAAGGUAUCCUUCAUCGAAAGGAGUGACAUUUUGUGGUGCACUCAUAGAGAUCUGCGGUUCUAGCAAAUGAUC ....(((...(((.((((((..((((...))))...(....)(((((.((((....)))))))))....)))))).)))...)))......... ( -24.40, z-score = -0.13, R) >droEre2.scaffold_4784 12775071 94 + 25762168 UCCACUGAUCCCGUGGAUCUAUAAGGUAUCCUUCAUCGAAAGGAGUGAUAUUUUGUGGUGCACUCGCAGAGAUCUGUGGCUGUAGCAUGUGAUC ......((((.((((...((((((((((((((((.......)))).))))))))))))((((..(((((....)))))..)))).)))).)))) ( -32.20, z-score = -2.36, R) >droAna3.scaffold_13337 3475176 86 - 23293914 GCAAAUGAUCUCGAGGAUCAAUCAGAUAAUUUCCAUCAUUAGGUGGUCUUCUUCGAGGAUCAAAUUGGGGAAUCGGUGGUCUCAUG-------- .....((((((((((((((.....))......(((((....)))))...))))))).))))).....((((........))))...-------- ( -20.90, z-score = -0.17, R) >consensus UCCACUGAUCCCGCGGAUCUAUAAGGUAUCCUUCAUCGAAAGGAGUGAUAUUUUGUGGAGCACUCACAGAGAUCUGCGGUUGUAGCAUAUGAUC ....(((...(((((((((.........(((((......))))).......(((((((.....))))))))))))))))...)))......... (-21.12 = -19.60 + -1.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:22:00 2011