| Sequence ID | dm3.chr2L |
|---|---|
| Location | 5,070,975 – 5,071,084 |
| Length | 109 |
| Max. P | 0.926385 |
| Location | 5,070,975 – 5,071,084 |
|---|---|
| Length | 109 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 66.23 |
| Shannon entropy | 0.52639 |
| G+C content | 0.40440 |
| Mean single sequence MFE | -24.68 |
| Consensus MFE | -8.86 |
| Energy contribution | -10.80 |
| Covariance contribution | 1.94 |
| Combinations/Pair | 1.21 |
| Mean z-score | -2.49 |
| Structure conservation index | 0.36 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.32 |
| SVM RNA-class probability | 0.926385 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 5070975 109 + 23011544 ---UUGUAUCGAGCGGCGGUCACACUUUUCGCU-CUUUUCGAUUUUUCGUUUCCGGCGUGUAAGUG-UACAAUUUUGUUGCU------CCACGUUUUUUUCCUAUUAAUUUAUAUUUAUC ---.......(((((((((..((((((..((((-.....(((....))).....))))...)))))-)......))))))))------)............................... ( -23.90, z-score = -2.83, R) >droYak2.chr2L 11870558 109 - 22324452 ---AAGUAAAGCGCGGCGGUCACACUUUUCGCU-CUUUUCGAUUUUUCGUUUCCGGCGUGUAAGUG-UACAAUUUUUUUGCU------CCACGUUUUUCCCCUAUUAAUUUAUCCUUAUC ---..(.((((((.((.(...((((((..((((-.....(((....))).....))))...)))))-).(((.....)))).------)).)))))).)..................... ( -21.30, z-score = -2.00, R) >droEre2.scaffold_4929 5150800 108 + 26641161 ---ACGUGACGAGCGGCGGUCACACUUUUCGCU-CUUUUCGAUUUUUCGUUUCCGGCGUGUAAGUG-UACAAUUUUGUUGCU------CCACGUUUUUUCC-UAUUAAUUUAUAUUUAUC ---(((((..(((((((((..((((((..((((-.....(((....))).....))))...)))))-)......))))))))------)))))).......-.................. ( -28.50, z-score = -3.55, R) >droAna3.scaffold_12916 2440729 116 - 16180835 CCCUGAAAAACAUCGAUAAUGGUAUUCUCAACCGCAUAUCGAUACUUCGUGACACAGCUGUUAUCGAUAUCGUCCCAUCGCUAACAAGCCACGGCUCUUUCCGGUUGAAUUUUUUG---- .((.((((...(((((((.((((.......))))..)))))))...(((((.....(((((((.((((........)))).)))).))))))))...)))).))............---- ( -25.00, z-score = -1.59, R) >consensus ___AAGUAAAGAGCGGCGGUCACACUUUUCGCU_CUUUUCGAUUUUUCGUUUCCGGCGUGUAAGUG_UACAAUUUUGUUGCU______CCACGUUUUUUCCCUAUUAAUUUAUAUUUAUC ............(((((((...(((((..((((......(((....))).....))))...)))))........)))))))....................................... ( -8.86 = -10.80 + 1.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:17:58 2011