| Sequence ID | dm3.chr3L |
|---|---|
| Location | 12,723,922 – 12,724,041 |
| Length | 119 |
| Max. P | 0.621542 |
| Location | 12,723,922 – 12,724,041 |
|---|---|
| Length | 119 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 95.71 |
| Shannon entropy | 0.07964 |
| G+C content | 0.42044 |
| Mean single sequence MFE | -30.04 |
| Consensus MFE | -26.78 |
| Energy contribution | -27.42 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.89 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.621542 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 12723922 119 - 24543557 CAUUGAUGAGCAAAACAUGUUCCUCCAGAAGGAACCAUCAAUAUCAAUCGAAAAUGCAUGCCGCGGCCUGAUCAAAAUAAAUUAUAAAACAAAAAGGGCCGCGCUCCGCAUUGGGUUUG- .(((((((..........((((((.....)))))))))))))...((((...(((((..((.(((((((..........................)))))))))...))))).))))..- ( -31.27, z-score = -1.86, R) >droSim1.chr3L 12108153 119 - 22553184 CAUUGAUGAGCAAAACAUGUUCCUCCAGAAGGAACCAUCAAUAUCAAUCGAAAAUGCAUGCCGCGGCCAGAUCAAAAUAAAUUAUAAAACAAAAAGGGCCGCGCUCCGCAUUGGGUUUG- .(((((((..........((((((.....)))))))))))))...((((...(((((..((.((((((............................))))))))...))))).))))..- ( -29.69, z-score = -1.50, R) >droSec1.super_0 4909267 119 - 21120651 CAUUGAUGAGCAAAACAUGUUCCUCCAGAAGGAACCAUCAAUAUCAAUCGAAAAUGCAUGCCGCGGCCAGAUCAAAAUAAAUUAUAAAACAAAAAGGGCCGCGCUCCGCAUUGGGUUUG- .(((((((..........((((((.....)))))))))))))...((((...(((((..((.((((((............................))))))))...))))).))))..- ( -29.69, z-score = -1.50, R) >droYak2.chr3L 12794983 120 - 24197627 CAUUGAUGAGCAAAACAUGUUUCCGCAGAAGGAACCAUCAAUAUCAAUCGAAAAUGCAUGCCGCGGCCUGAUCAAAAUAAAUUAUAAAACAAAAAGGGCCGCGCUCCGCAUUGGGUUUUG .(((((((((((.....))))(((......)))..)))))))........(((((.(((((((((((((..........................))))))))....))).)).))))). ( -30.47, z-score = -1.25, R) >droEre2.scaffold_4784 12730342 119 - 25762168 CAUUGAUGAGCAAAACAUGUUCCUGCAGAAGGAACCAUCAAUAUCAAUCGAAAAUGCAUGCCGCGGCCUGAUCAAAAUAAAUUAUAAAACAAAAAGGGCCGCGCUCCGCAUUGGGAUUG- .(((((((..........((((((.....)))))))))))))..(((((...(((((..((.(((((((..........................)))))))))...)))))..)))))- ( -35.77, z-score = -3.00, R) >droAna3.scaffold_13337 19990751 120 + 23293914 CAUUGAUGAGCAAAACAUGUUUCUGCAGAAGGAACCAUCAAUAUCAAUCGAAAAUGCAUGCCGCGGCCUGAUCAAAAUAAAUUAUAAAACAAAAAGGGCCGCUCUUCGUAUAUGGUUUAG .(((((((..........((((((.....)))))))))))))...(((((...((((.....(((((((..........................))))))).....)))).)))))... ( -23.37, z-score = -0.30, R) >consensus CAUUGAUGAGCAAAACAUGUUCCUCCAGAAGGAACCAUCAAUAUCAAUCGAAAAUGCAUGCCGCGGCCUGAUCAAAAUAAAUUAUAAAACAAAAAGGGCCGCGCUCCGCAUUGGGUUUG_ .(((((((..........((((((.....)))))))))))))...((((...(((((....((((((((..........................))))))))....))))).))))... (-26.78 = -27.42 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:21:57 2011