| Sequence ID | dm3.chr3L |
|---|---|
| Location | 12,723,735 – 12,723,842 |
| Length | 107 |
| Max. P | 0.845656 |
| Location | 12,723,735 – 12,723,842 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 84.13 |
| Shannon entropy | 0.28695 |
| G+C content | 0.36311 |
| Mean single sequence MFE | -17.85 |
| Consensus MFE | -15.32 |
| Energy contribution | -15.85 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.86 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.89 |
| SVM RNA-class probability | 0.845656 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 12723735 107 - 24543557 AACCAAAUUAAUUUUGACAUAAUGUCAGACAAACAAAUGUUUGCACUUAAGCAGACAGUGCCUUUGUCAAGUAUGUAUCUUCCUUCUGCAGUCCGAAACUCUCAGCU ..............((((.....))))((((((....(((((((......))))))).....)))))).................(((.(((.....)))..))).. ( -19.00, z-score = -0.61, R) >droSim1.chr3L 12107980 93 - 22553184 AACCAAAUUAAUUUUGACAUAAUGUCAGACAAACAAAUGUUUGCACUUAAGCAGACAGUGCCUUUGUCAAGUAUGUAUCUUCCUCCUGCAGCU-------------- ..............((((.....))))((((((....(((((((......))))))).....)))))).(((.((((.........)))))))-------------- ( -19.10, z-score = -1.50, R) >droSec1.super_0 4909095 92 - 21120651 AACCAAAUUAAUUUUGACAUAAUGUCAGACAAACAAAUGUUUGCACUUAAGCAGACAGU-CCUUUGUCAAGUAUGUAUCUUCCUCCUGCAGCU-------------- ..............((((.....))))((((((....(((((((......)))))))..-..)))))).(((.((((.........)))))))-------------- ( -19.70, z-score = -2.35, R) >droYak2.chr3L 12794816 94 - 24197627 AACCAAAUUAAUUUUGACAUAAUGUCAGACAAACAAAUGUUUGCACUUAAGCACACAGUGCCUUUGUCAA----GUAUCCACCUCCUGCAGUCGAAAA--------- ...........(((((((.........((((((....(((.(((......))).))).....))))))..----(((.........))).))))))).--------- ( -17.70, z-score = -1.65, R) >droEre2.scaffold_4784 12730175 94 - 25762168 AACCAAAUUAAUUUUGACAUAAUGUCAGACAAACAAAUGUUUGCACUUAAGCACACAGUGCCUUUGUCAA----GUAUCUUCCUUCUGCAGUCGAAAA--------- ...........(((((((.........((((((....(((.(((......))).))).....))))))..----(((.........))).))))))).--------- ( -17.70, z-score = -1.38, R) >droAna3.scaffold_13337 19990581 98 + 23293914 AACCAAAUUAAUUUUGACAUAAUGUCAGCCAAACAAAUGUUUGCACUUAAGAAGACAGUGCCUUUGUUAAGUCUUUUUCCCCAGUCACCAGUAUCCAU--------- ..............((((.........((.((((....))))))....((((((((...((....))...)))))))).....))))...........--------- ( -13.90, z-score = -1.05, R) >consensus AACCAAAUUAAUUUUGACAUAAUGUCAGACAAACAAAUGUUUGCACUUAAGCAGACAGUGCCUUUGUCAAGUAUGUAUCUUCCUCCUGCAGUC__AAA_________ ..............((((.....))))((((((....(((((((......))))))).....))))))....................................... (-15.32 = -15.85 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:21:56 2011