| Sequence ID | dm3.chr3L |
|---|---|
| Location | 12,721,012 – 12,721,069 |
| Length | 57 |
| Max. P | 0.631762 |
| Location | 12,721,012 – 12,721,069 |
|---|---|
| Length | 57 |
| Sequences | 4 |
| Columns | 57 |
| Reading direction | reverse |
| Mean pairwise identity | 69.01 |
| Shannon entropy | 0.50925 |
| G+C content | 0.34904 |
| Mean single sequence MFE | -4.25 |
| Consensus MFE | -2.91 |
| Energy contribution | -1.85 |
| Covariance contribution | -1.06 |
| Combinations/Pair | 1.67 |
| Mean z-score | -0.67 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.631762 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 12721012 57 - 24543557 UAUCUCCCACAAUAAAUUAAAUUCAACCUCUGAUUGUGCAACCUUCAGAUACAAACG ............................(((((..(.....)..)))))........ ( -4.50, z-score = -1.91, R) >dp4.chrXR_group6 3512712 55 - 13314419 --UGUAUAUAAUUGAAUAAAAAAAAACCUGAAAGCUUUCCUGCGUUUGAUACUUAGC --...............................((......)).............. ( -1.90, z-score = 1.07, R) >droYak2.chr3L 12791986 57 - 24197627 UAUCUCCCACAAUAAAUUAAAUUCAACCUCUGAUUGUGCAACCUUCAGAUGCAAAAG ............................(((((..(.....)..)))))........ ( -4.50, z-score = -0.89, R) >droEre2.scaffold_4784 12727484 57 - 25762168 UAUCUCCCACAAUAAAUUAAACCCAACCUCUGGUUGUGCAACCUUCAGAUGCAAAAG .......................(((((...)))))((((.(.....).)))).... ( -6.10, z-score = -0.95, R) >consensus UAUCUCCCACAAUAAAUUAAAUUCAACCUCUGAUUGUGCAACCUUCAGAUACAAAAG ............................(((((..(.....)..)))))........ ( -2.91 = -1.85 + -1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:21:55 2011