| Sequence ID | dm3.chr3L |
|---|---|
| Location | 12,719,223 – 12,719,338 |
| Length | 115 |
| Max. P | 0.905723 |
| Location | 12,719,223 – 12,719,338 |
|---|---|
| Length | 115 |
| Sequences | 5 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 68.78 |
| Shannon entropy | 0.55761 |
| G+C content | 0.49032 |
| Mean single sequence MFE | -29.96 |
| Consensus MFE | -16.52 |
| Energy contribution | -18.38 |
| Covariance contribution | 1.86 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.35 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.18 |
| SVM RNA-class probability | 0.905723 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 12719223 115 - 24543557 CAAACAACCGAACAGCUAAACAUCCAAACAAUGGUCUUGACAAGAGGGUUGCAUCGC--GCUUUUGGCUUCUCGCCAGGGGCAUUAGUUCGCAAUCUCGACCAGCGGACGCGGACCC ....(((((..............(((.....))).(((.....))))))))..((((--(((((((((.....)))))))))....((((((...........)))))))))).... ( -33.90, z-score = -1.02, R) >droSim1.chr3L 12103485 115 - 22553184 CAAACAUCCGAACAGCUAAACAUCCAAACAAUGGUCUUGACAAGAGGGUUGCAUCGC--GCUUUUGGCUUCUCGCCAGGGGCAUUAGUUGGCAUCCUCGACCAGCGGACGCGGACCC ......((((....(((...((.(((.....)))...))....((((((.((..(..--(((((((((.....)))))))))....)...))))))))....))).....))))... ( -34.50, z-score = -0.66, R) >droSec1.super_0 4904608 115 - 21120651 CAAACAUCCGAACAGCUAAACAUCCAAACAAUGGUCUUGACAAGAGGGUUGCAUCGC--GCUUUUGGCUUCUCGCCAGGGGCAUUAGUUGGCAUCCUCGACCAGCGGACGCGGACCC ......((((....(((...((.(((.....)))...))....((((((.((..(..--(((((((((.....)))))))))....)...))))))))....))).....))))... ( -34.50, z-score = -0.66, R) >droYak2.chr3L 12790178 106 - 24197627 ---------AAAGAGUCAAACAUCCAAACAAUGGUCUUGACAAGAGGGUUGCAUCGC--GCUUUUGGCUUCUCGCCAGGGGCAUUAGUUCGCAUCCUCGACCAGCGGACGCGGACCC ---------.....(((((....(((.....)))..)))))....(((((....(((--(((((((((.....)))))))))....((((((...........)))))))))))))) ( -37.30, z-score = -2.02, R) >droVir3.scaffold_13049 6140138 89 + 25233164 -----UUACCAAAAAAAAAAAAAAAAAACAA-AACAGUAACUCGAGGUUUAAAUCUUCAAAUAUCAAUUCACAAACAAGCGCAAUCAAUUGUGCU---------------------- -----..........................-...........((((.......))))...................(((((((....)))))))---------------------- ( -9.60, z-score = -2.41, R) >consensus CAAACAUCCGAACAGCUAAACAUCCAAACAAUGGUCUUGACAAGAGGGUUGCAUCGC__GCUUUUGGCUUCUCGCCAGGGGCAUUAGUUCGCAUCCUCGACCAGCGGACGCGGACCC ................................(((((......((((((.((...((..(((((((((.....)))))))))....))..)))))))).....((....))))))). (-16.52 = -18.38 + 1.86)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:21:53 2011