| Sequence ID | dm3.chr3L |
|---|---|
| Location | 12,710,424 – 12,710,515 |
| Length | 91 |
| Max. P | 0.959967 |
| Location | 12,710,424 – 12,710,515 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 60.72 |
| Shannon entropy | 0.74039 |
| G+C content | 0.38636 |
| Mean single sequence MFE | -22.03 |
| Consensus MFE | -8.00 |
| Energy contribution | -7.78 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.55 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.36 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.67 |
| SVM RNA-class probability | 0.959967 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 12710424 91 + 24543557 ---CAACAUACAUACAUACCAACAUACUAUAU-UGUAU-----UUUCGUUCUGG-AGAAAGUGCGAAGGCACUUAUGAUUACUUUGAUUA---UGCCGGGCCGA ---....................((((.....-.))))-----..(((..((((-...((((((....))))))((((((.....)))))---).))))..))) ( -21.40, z-score = -2.33, R) >droAna3.scaffold_13337 19978782 87 - 23293914 --------------UAU--GAAUGUAUGACUA-AGUAAGGGUUUGGAGUUUUUGGAGAAAGUGCGAAGGCACUUAUGAUUACUUUGAUUAUUGUCCCGGGCCGG --------------...--.............-......((((((((((..(..(((.((((((....)))))).......)))..)..)))...))))))).. ( -20.20, z-score = -0.92, R) >droEre2.scaffold_4784 12717249 98 + 25762168 AAACAUACUAUGUAUAUU-GAAUAUGUGCGUA-GGUAUGGCCUUCCGGUUCCCG-AGAAAGUGCCAAGGCACUUAUGAUUACUUUGAUUA---UGCCGGGCCGA ...((((((((((((((.-....)))))))))-.)))))......(((..((((-...((((((....))))))((((((.....)))))---)..))))))). ( -32.80, z-score = -2.92, R) >droSec1.super_0 4895764 96 + 21120651 ---CAACCUACAUACAUACCUACAUACUAUAU-UGUAUGGCCUUUUCGUUCUGG-AGAAAGUGCGAAGGCACUUAUGAUUACUUUGAUUA---UGCCGGGCCGA ---...................(((((.....-.)))))......(((..((((-...((((((....))))))((((((.....)))))---).))))..))) ( -25.40, z-score = -2.53, R) >droSim1.chr3L 12094713 96 + 22553184 ---CAACUUACAUACAUACCUACAUACUAUAU-UGUAUGGCCUUUUCGUUCUGG-AGAAAGUGCGAAGGCACUUAUGAUUACUUUGAUUA---UGCCGGGCCGA ---...................(((((.....-.)))))......(((..((((-...((((((....))))))((((((.....)))))---).))))..))) ( -25.40, z-score = -2.74, R) >droGri2.scaffold_15110 7781211 93 - 24565398 ----ACAUCAAUUUUGUU-GCACACAUUACGACUAAAUGAGUAUUCAAGAUAUAAAAAAAAACUUGAAACGUUUC---CCAUUUUUAUUAUACAUACGUAU--- ----((.(((.(((.(((-(.........)))).)))))))).((((((.............))))))((((...---.................))))..--- ( -6.97, z-score = 0.79, R) >consensus ___CAACCUACAUACAUA_CAACAUACUAUAA_UGUAUGGCCUUUUCGUUCUGG_AGAAAGUGCGAAGGCACUUAUGAUUACUUUGAUUA___UGCCGGGCCGA ......................(((((.......)))))...................((((((....)))))).............................. ( -8.00 = -7.78 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:21:51 2011