| Sequence ID | dm3.chr3L |
|---|---|
| Location | 12,702,117 – 12,702,208 |
| Length | 91 |
| Max. P | 0.621785 |
| Location | 12,702,117 – 12,702,208 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 86.47 |
| Shannon entropy | 0.24688 |
| G+C content | 0.61473 |
| Mean single sequence MFE | -34.88 |
| Consensus MFE | -29.23 |
| Energy contribution | -29.12 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.29 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.621785 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 12702117 91 - 24543557 AUCGAAAUGGGUUUCGAAACUGGG---AGUGACUACGGCCGCAGGAGCGUAAGCUUCUGCUGCUCC-CGGAAGGCGAUCAGCGAGCGGAAGGCGG .((((((....))))))..(((((---((((.(....).)((((((((....)))))))).)))))-)))...((.....))..((.....)).. ( -38.10, z-score = -2.00, R) >droSim1.chr3L 12086605 91 - 22553184 AGCGAAAUGGGUUUCGAAACUGGG---AGUGACUACGGCCGCAGGAGCGUUAGCUUCUGCUGCUCC-CGGAAGGCGAUCAGCGAGCGGAAGGCGG .((((((....))))....(((((---((((.(....).)((((((((....)))))))).)))))-)))...))......((..(....).)). ( -34.80, z-score = -0.61, R) >droSec1.super_0 4887723 92 - 21120651 AGCGAAAUGGGUUUCGAAACUGGG---AGUGACUACGGCCGUAGGAGCGUGAGCUUCUGCUGCUCCUCGGAAGGCGAUCAGCGAGCGGAAGGCGG ..(((((....)))))....(((.---.....)))(.(((((((((((....))))))))(((((..(....)((.....)))))))...))).) ( -32.90, z-score = -0.11, R) >droYak2.chr3L 12772474 81 - 24197627 ----------GAAUCGAAACUGGG---AGUGACUACGGCCGCAGGAGCGUGAGCUUCUGCUGCUCC-CGGAAGGCGAUCAGCGAGCGGAAGGCGG ----------((.(((...(((((---((((.(....).)((((((((....)))))))).)))))-)))....)))))..((..(....).)). ( -37.20, z-score = -2.55, R) >droEre2.scaffold_4784 12707321 91 - 25762168 AUCGAAAUGGGAUUCGAAACUGGG---AGUGACUACGGCCGCAGGAGCGUGAGCUUCUGCUGCUCC-CGGAAGGCGAUCAGCGAGCGGAAGGCGG .(((((......)))))..(((((---((((.(....).)((((((((....)))))))).)))))-)))...((.....))..((.....)).. ( -38.10, z-score = -1.99, R) >droAna3.scaffold_13337 19970118 78 + 23293914 ----------------AGAUUGGAUUCAGUGACUAUGGCCGCAGGAGCGUCAGCUUCUGCUGCUCC-CGGAAGGCGAUCAGCGAACGGAAGGCGG ----------------..((((....))))........((((((((((....))))))((((.(((-(....)).)).))))...(....))))) ( -28.20, z-score = -0.51, R) >consensus A_CGAAAUGGGUUUCGAAACUGGG___AGUGACUACGGCCGCAGGAGCGUGAGCUUCUGCUGCUCC_CGGAAGGCGAUCAGCGAGCGGAAGGCGG ...................................(.(((((((((((....))))))))(((((..(....)((.....)))))))...))).) (-29.23 = -29.12 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:21:48 2011